Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00026 ATGAGCTCCGACACGACGTCGTATTGGTGCTACAGCTGCACCCGCTTCGTTCACATCCAGGAGCACCACGACGTCCTTTGCCCTCGCTGCCAGGGCGGTTTCGTCGAGAAGGTTCAGGCCGGCCACTCGCCGGCAGTCTCTCTCATCGCTGATGGCGCCTCCAGAAGGCAGGGGTTTCGCCGCCGACGCCGTAACGCCGGGACTCACTCGCCGTTCAACCCGGTGATCGTGCTCCGGGGACCGGGGGAGGACGAGGAGAGCAGTTTTGAGTTGTATTACGACGGCGACGACGGCGCGGGTCTCCGACCGCTGCCGTCGACTATGTCGGAGTTTTTGCTTGGATCGGGATTCGATCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGATTCGGGAGGGCGGAGAATCCGCCAGCATCCAAGGCGGCGATAGAGTCAATGCCGACTGTGCAAATCGCCGAGCATCAGGTCGTGACAGAGACGCACTGCGCCGTTTGCAAAGAGGCCTTCGAGCTAGGCGCGTTGGCGCGTGAGATGCCGTGCAAGCACCTTTACCACTCCGATTGCATTCTCCCGTGGCTGTCGATGCGAAACTCGTGCCCGGTGTGCCGCCACGAGCTGCCGTCGGAGCAAGCGTCATCGGAGAGCAGAGTTGCTGGTCAGATCGAAGAGGAAGCGGTAGGGTTGACCATATGGAGGCTGCCTGGCGGCGGATTCGCCGTGGGTAGGTTCGCCGGTGAGAGCCACTTGCCGGTGGTGTACACGGAGATGGAGAATGGTGGGAATTCGAGCGAAGGTTCTAGGAGAATCTCTCTGTCAGTTGGAAGCGGGAGAGTGAGGGAAAGTCGAGGTGGAATTGGCAGAATGTTCCGGAATTGGTTTGGGAGAATTGGGGCTTTGACCAGAAGCCGTAGCCTTTCAACTTCGCTCTTCAGTAGAAGAAGAAGTTCCACGAGAACCTGGGTTTTGGAAGATTGA 981 0.5923 MSSDTTSYWCYSCTRFVHIQEHHDVLCPRCQGGFVEKVQAGHSPAVSLIADGASRRQGFRRRRRNAGTHSPFNPVIVLRGPGEDEESSFELYYDGDDGAGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGFGRAENPPASKAAIESMPTVQIAEHQVVTETHCAVCKEAFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQASSESRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMENGGNSSEGSRRISLSVGSGRVRESRGGIGRMFRNWFGRIGALTRSRSLSTSLFSRRRSSTRTWVLED 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00026 326 CDD RING-H2_RNF126-like 164 205 - -
Vium1159g00026 326 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Vium1159g00026 326 SUPERFAMILY RING/U-box 144 210 - -
Vium1159g00026 326 Pfam Ring finger domain 163 205 IPR001841 -
Vium1159g00026 326 Pfam Protein of unknown function (DUF1117) 228 317 IPR010543 -
Vium1159g00026 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 56 209 - -
Vium1159g00026 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 211 IPR013083 -
Vium1159g00026 326 FunFam E3 ubiquitin-protein ligase RING1-like 126 211 - -
Vium1159g00026 326 SMART ring_2 164 204 IPR001841 -
Vium1159g00026 326 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00026 Vium-Chr1159 149416 150960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00026 93 216 C3H Transcription Factor Family AT5G01980 41.129 2.87e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00026 K11982 - gmx:100784822 523.472