Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00015 ATGCTTTCCACCAATTCTCTTGTGCAAAATTTTGGGGGTACTATCTCTGTGTTTTCGGATCAGAACCAAGTGACGGAGGGGATTGAGTTAGATGATTCACCTTCTTCTTCGGGTACAAGCTCAAGTGGAGAATCGACAAAGTACTCCAACAACATCCTGAGATACATAAGCGACATCCTCATGGACGAGGAAGACGACCTGTTAAACAAACCTTGCATGTTGCAGGAATGTTTGCGACTCCAGGCTGCTGAAAAGTCATTCCTTGATGTCCTTGTCCATCACAGCCACCCTTCTTCCAGTGGTGAAAGCATTGGCATCGCAGATTCTGATGAAAATTTTGGTCGCACTGTTAGTTTTGAGAGCAATGGCAGCTGCGTCACTGATCATTCATGTGACTGTGACTTGGTCCATGGCGTAGGTGAATTTGACTCTTCTTTCTTACCACAGCAAACCCATCTAGTTTATTCCCCAGATGTAGTTGATGCATTTAGGGTTCGTGATGGAACCTGGAATCTCTTTCAGTCTCATACGAAGCCGTTTATGGTGGAAGAGGGTCGTTCAACTTCAGCATCCAGAGAAAAGAGAAGCCATGAGCTGGATGATGATGCTGGTCTTGAACAAGATGGAAGAAGAGGCGCCAAGGTTTCAGCGGTCTTTTCTGGCGAGTCAGAGTCACCAGAGATCTTAGATGAGGTGCTGCTTTATCAAATTGGAAGAAGTGGATGTTCTTCTGAACCATCACAGGGTGTTGATTTAGGAGGGTCCAATGGAAAGGGAGCACGCTCACGTTCAAAGAAGGGGTCCACCAAAGCAGGTACAGCGGTAGATTTATGGACCCTTCTAACTCAATGTGCACAAGCAGTGGCAAGCTTTGACCAAAGGAATGCAAATGACTTACTCGGCCAGATTAATCAACACTCTTCACCTTTTGGGGATGGACTCCAGCGATTGGCTCATTACTTTGCCAAGGGCCTTGAGATAAGGTTGGCTGCTGGGACCCCATCATACGTGCCACTAGAAGTAGCAACTGCTGCTGATATGTTGAAAGCTTACAAACTATTTGTCACATCCTCTCCTTTGCAAAGGATGTCAAATTATTTGACAACCAGGACAGTCATTAGTCTTGTGGAAAATGAGAGCAGTGTTCACGTTATTGACTTTGGCATTTGCTATGGTTTTCAGTGGCCCTGCCTTATCAAGAGGCTGTCAGAAAGAGATGGTGGTCCTCCAAGGCTGCGTATAACAGGAATTGATCTTCCTCGGCCAGGATTTCGGCCTGCCGAAAGGGTTGAGGAGACAGGGCGGCGTTTGGCAAACTACTGCAAGAAGTTCAATGTCCCTTTTGAGTACAACTGCCTTGCACAGAAATGGGAGACTATAAAACTTGCAGATCTCAAGATAGACAGAAATGAAGTCACCGTTGTTAGCTGTTTCTACCGGCTGAAGAACCTGCCTGATGAAACTGTGGCAGTGAACAGTCCAAGAGATGCTGTGTTAAAGTTGATTAGGAAGATCAATCCAAACATTTTCCTCCATGGGGTGGTCAATGGCACTTATAGTGCTCCTTTTTTCTTGACACGGTTCAGGGAAGCGCTGTACCACTTCTCATCACTGTTTGATATGTTTGAGGTTAATGTGCCACGTGAAGATTCGCAAAGGTTGATGTTTGAGAAAGGGTTGCTTGGAAGGGATGCCATCAATGTTATAGCGTGTGAGGGGGCAGAGAGAGTTGAGAGACCTGAGACTTACAAGCAGTGGCAGGTTAGGAACCTGAGAGCTGGGTTCAAACAAGTTACTTTTGATCCTCAGCTGGTGAATTATGCGAAACAAATGGTGAAGAAGGAACATCACAAAGATTTTGTGGTGGCTGAGGATGGGAAGTGGCTTTTGCAGGGATGGAAAGGGCGAATTCTGAATGCCATTTCTGCTTGGACTCCTGCTTGA 1944 0.4599 MLSTNSLVQNFGGTISVFSDQNQVTEGIELDDSPSSSGTSSSGESTKYSNNILRYISDILMDEEDDLLNKPCMLQECLRLQAAEKSFLDVLVHHSHPSSSGESIGIADSDENFGRTVSFESNGSCVTDHSCDCDLVHGVGEFDSSFLPQQTHLVYSPDVVDAFRVRDGTWNLFQSHTKPFMVEEGRSTSASREKRSHELDDDAGLEQDGRRGAKVSAVFSGESESPEILDEVLLYQIGRSGCSSEPSQGVDLGGSNGKGARSRSKKGSTKAGTAVDLWTLLTQCAQAVASFDQRNANDLLGQINQHSSPFGDGLQRLAHYFAKGLEIRLAAGTPSYVPLEVATAADMLKAYKLFVTSSPLQRMSNYLTTRTVISLVENESSVHVIDFGICYGFQWPCLIKRLSERDGGPPRLRITGIDLPRPGFRPAERVEETGRRLANYCKKFNVPFEYNCLAQKWETIKLADLKIDRNEVTVVSCFYRLKNLPDETVAVNSPRDAVLKLIRKINPNIFLHGVVNGTYSAPFFLTRFREALYHFSSLFDMFEVNVPREDSQRLMFEKGLLGRDAINVIACEGAERVERPETYKQWQVRNLRAGFKQVTFDPQLVNYAKQMVKKEHHKDFVVAEDGKWLLQGWKGRILNAISAWTPA 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00015 647 MobiDBLite consensus disorder prediction 242 268 - -
Vium1159g00015 647 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 213 638 IPR005202 -
Vium1159g00015 647 MobiDBLite consensus disorder prediction 187 209 - -
Vium1159g00015 647 MobiDBLite consensus disorder prediction 181 210 - -
Vium1159g00015 647 MobiDBLite consensus disorder prediction 27 46 - -
Vium1159g00015 647 Pfam GRAS domain family 279 645 IPR005202 -
Vium1159g00015 647 ProSiteProfiles GRAS family profile. 268 645 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00015 Vium-Chr1159 84184 86518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00015 52 647 GRAS Transcription Factor Family AT5G59450 44.059 6.96e-166 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium1159g00015 GRAS 1.5e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00015 - - aprc:113855970 981.089