Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00014 ATGGATCCAAACACTGTCATGAGCAGTTACGAGTTTGATGAATGGGATCTCAATGGACACTACACCAACCTCTTCACGGATCCTTTTTTCTCTCAGTCCGATGTGGGCCCACCTGGGTTTTCTCCAAATACAATTTTAAACGCTGACCCGCTTGTTTCGTCCTCCGCCGACTCCGCCGCTATGGTGGCTACGGTTGAGGAAGACACTGATTTTTCAGAAACCTTCAAGTTCATAAGTCAAATTCTTATGGAAGAGAACTTTGAACAGAAACCTTGTATGTGCTATGACCCTTTGACTCTGCAACACACTGAGAAATCATTCTATGATGCTTTGGAATTGGAACCGCCACTGCCTCTTTCCCCTAATCAGCACCCGCTTGAGAGCCCCGATGGTAATTCTTCCAATTCCACTACTGATTCAGCCAATTCTCACGACTTGAAGCCTTCTTCACCCAATACACCTGTTTCTGGTGGTGGTGAGGCTTTGCATTCCTCTACCCACGCGCCCTCTTTCTTTGTTCCTCCGTCTGCTTTGACAAAAATTAACGATGGAACCCTGGATATGGATTCTTCTGTGAGCAAGCTCTTGGCTGAAAATATTTTCAATGATGCAGAATCTATGTTGCAGTTTAGGAGAGGGTTGGAGGAGGCTAGTAAGTTTCTTCCTCAGAGACCTCAGCTTTTCACTGGGTTGGAGAGCGCCACGGATTCTGCGGAACCAGAGGTAGGAGGGGAGGTAACCGTTAAGCGTGAGAATTCAATTGGGGTGAAGAGTAGAAAGAATCACGCGCGCCAACAAGATGAAGAAGAAGAAAGAAGCAACAAACACTCTGAGGTTTGTGTTGATGAGGAGAATGAAATATCTGAAATATTTGATAAGGTATTGCTTAGTGTTGAAAATGTGCCACTGTGTGCTAGTAAGAATGTATCTGTGGCAGTGGGAGATGGTAACGCAAAGCTGAGTGAGCAATCGCCTTCGGTCGATGTAGGGAAGGTTCGTTCCAAGAGGCAAGGGAAGAAGAAGGAAACAGTGGATTTGAGGACCCTTTTGGTTCTGTGTGCACAAGCTGTGTCTGCCAGTGACAACAGGACTGCTAATGAACTACTGAAGCAGATTAGGCAGCATTCTTCTGCTTTGGGTGATGCCTCACAAAGGTTGGCTCATTATGTGGCCAATGCTTTGGAGGCTCGCTTGGTTGGTGCCGGAACTGGAACACAGATATTTTATATGAGCTACAGGAACTTCACTACTACTGATTTCCTGAAAGCGTACCAAGTTTTCATATCTGCCTGCCCTTTCAAGAAATTTGCACATTTCTTTGCAAATAAAATGATTATGAAAACAGCAGAAAAGGCAGAAACTCTTCATATTATTGACTTTGGTATCTTGTATGGTTTCCAGTGGCCAATTCTTATCAAGTTTTTATCAAGTAGAACTGGAGGGCCTCCCAAGCTGCGCATCACAGGAATAGAGTATCCCCAACCAGGCTTTCGCCCATCCGAAAGAATCGAGGAGACTGGTCGTCGTCTAGCTAAGTATTGCAAACGATTCAATGTTCCCTTTGAGTACAAGGCCATACCATCAAGAAACTGGGAAACCATTCAAATTGAAGACCTTAAGATTGAGAGCAATGAGGTGCTTGCTGTGAACTGTCTGGTAAGGTTTAAGAATTTGCTTGACGAATCAATTGAAGTGAGCAGTCCCAAAAATGCTGTTCTGAATTTAATCAGGAAGATGAATCCGCATATTTTTGTTCAATCCGTGGTAAATGGATCTTATAATGCCCCTTTCTTTGTCACGCGCTTCCGGGAGGCACTGTTCCATTATTCTTCAATTTATGATATGTTTGATACTCTGGTATCCCGTGAAAATGAATGGAGGTTGATGCTTGAGAGAGAATTTTTGGGTCGGGAGATCATGAATGTTGTAGCATGTGAAGCTCTTGAAAGGGTTGAGAGGCCTGAAACATACAAACAATGGCAGGTTAGGAATACTAGAGCTGGTTTTAGGCAGCTACCACTGGACAAGGAGTTAATGGCCAAATTTAGGAACAAGTTAAGGGAATGGTACCACAAGGATTTTGTCTTTGATGAAGATGGCGGCTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTATGCTTCATCTTGTTGGGTGCCAGCATAA 2166 0.4418 MDPNTVMSSYEFDEWDLNGHYTNLFTDPFFSQSDVGPPGFSPNTILNADPLVSSSADSAAMVATVEEDTDFSETFKFISQILMEENFEQKPCMCYDPLTLQHTEKSFYDALELEPPLPLSPNQHPLESPDGNSSNSTTDSANSHDLKPSSPNTPVSGGGEALHSSTHAPSFFVPPSALTKINDGTLDMDSSVSKLLAENIFNDAESMLQFRRGLEEASKFLPQRPQLFTGLESATDSAEPEVGGEVTVKRENSIGVKSRKNHARQQDEEEERSNKHSEVCVDEENEISEIFDKVLLSVENVPLCASKNVSVAVGDGNAKLSEQSPSVDVGKVRSKRQGKKKETVDLRTLLVLCAQAVSASDNRTANELLKQIRQHSSALGDASQRLAHYVANALEARLVGAGTGTQIFYMSYRNFTTTDFLKAYQVFISACPFKKFAHFFANKMIMKTAEKAETLHIIDFGILYGFQWPILIKFLSSRTGGPPKLRITGIEYPQPGFRPSERIEETGRRLAKYCKRFNVPFEYKAIPSRNWETIQIEDLKIESNEVLAVNCLVRFKNLLDESIEVSSPKNAVLNLIRKMNPHIFVQSVVNGSYNAPFFVTRFREALFHYSSIYDMFDTLVSRENEWRLMLEREFLGREIMNVVACEALERVERPETYKQWQVRNTRAGFRQLPLDKELMAKFRNKLREWYHKDFVFDEDGGWMLQGWKGRILYASSCWVPA 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00014 721 ProSiteProfiles GRAS family profile. 337 719 IPR005202 -
Vium1159g00014 721 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 272 714 IPR005202 -
Vium1159g00014 721 MobiDBLite consensus disorder prediction 252 277 - -
Vium1159g00014 721 MobiDBLite consensus disorder prediction 249 277 - -
Vium1159g00014 721 MobiDBLite consensus disorder prediction 125 160 - -
Vium1159g00014 721 MobiDBLite consensus disorder prediction 114 173 - -
Vium1159g00014 721 Pfam GRAS domain family 346 718 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00014 Vium-Chr1159 69497 72284 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00014 74 721 GRAS Transcription Factor Family AT1G07530 51.012 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium1159g00014 GRAS 3.3e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00014 - - aprc:113855970 1057.74