Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00013 ATGGCCGCCACAACCAACGCCGTTGCCCCGCCGCGCCAGCTCTCTCAAAAGGAAGCCGACATCCAGATGATGTTGGCAGCCGACATTCACCTCGGCACCAAAAATTGTGATTTTCAAATGGAGCGCTACATCTTCAAGCGCCGCAACGATGGTATTTATATTATCAACCTTGGTAAGACATGGGAGAAGCTTCAACTTGCTGATAGGGTTATCGTTGCAATTGAGAACCCTCAGGATATTATTGTGCAATCTGCTCGGCCTTATGGTCAGAGAGCGGTTCTCAAGTTTGCCCAGTACACTGGTGCTCATGCCATTGCTGGAAGGCACACTCCTGGTACCTTTACCAATACTCAATTCAACAGTTAA 366 0.4863 MAATTNAVAPPRQLSQKEADIQMMLAADIHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLADRVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNTQFNS 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00013 121 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium1159g00013 121 PANTHER 40S RIBOSOMAL PROTEIN SA 11 118 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vium1159g00013 121 CDD RPS2 24 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium1159g00013 121 SUPERFAMILY Ribosomal protein S2 16 119 IPR023591 -
Vium1159g00013 121 Gene3D - 20 121 - -
Vium1159g00013 121 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium1159g00013 121 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium1159g00013 121 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00013 Vium-Chr1159 67164 67720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00013 5 116 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 84.821 4.58e-68 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00013 K02998 - vum:124825230 245.743