Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00012 ATGGATAGAAGAGTCTCCTCCACCATCAATATTGCTAATGATGAAGCAGAATCTTTCTTTGATGAGAGTGATGTCTCTGCTGTCCTTGGCTACATAAAGCAAATGCTGATGGAAGAGGACACAGAAGAAAAGTACAGTATGTTCCATGATTCCTTAGCTCTCCAACATACTGAGAGATCATTTTATCAGGTCATCACTCACCAGAAATCTTCTTCCCCTTCTTCCACACACCATCATCATGTTCACAGTAACCCCAGTTACAGAGTGGAGAGCCCTGAGCAAAATGTCTCTGGTTGCTCCAGTGATAATAGTACTGGTAGTTATGGCAGTACATCCATCTCCTCTGATTCTCAGTGGAGTGTTGACTATAACACCCCACCACTGCCAAACACTTTTACCTTTCCGGATAACTTTGCTTTCCACTCAAATTCAACCTCCACCACTCAATCTTCCACGAATACTGGATTTGGATTCTTAGATAATACCCTTCTTGATTCTGCATTTCAAGAGCAATTCAAGAGAGGTCTAGAGCAAGGTACCAGCTTCCTTCCTAAACATACTCCGTTCATTGTTGACACGGACAGCACAGCCTTTTCAGCGGTTCCAACTGTGGTAATTAAGACAGAAACAGAAGAAAGTGTTGAAGAGGAGCATTTTCTGTCTGTGTCAAGAAGGAGAAATCGGGATCGGGAAGAGTATGAAGCAGATGGGAGAATCAGGAAGACATCGGCAACGTACGTGGATGAAAGTGAGCTATCTGAATTGCTTGATAAAGTGGTGCTAGGCACTGGTTTAGGAAAACGGGTGCCTTCTGACACAGCCCTTTATCAAAAGGATGAAACATTCTTAGCAAACATGTTTGGTGGGGAGGTCAGGAAAAGTAACGAGGAAGTTGTAGATCTGAGAGCACTATTGATGCTTTGTGCACAGGCTGTTGCTTCTGATAGTCCTTCATTTGCAAAGCAACTATTAAAGCAGATTAAGCAGCATTCTTCTCCAATAGGGGATGATACTCAGAGGCTTGCACATTACTTTGGAAACGCCCTTGGAGCATGCTTGGATGGAACCGGTTTCCAGGTTTATAGTGTTCTATCCTCCAAAAGAATCTCTGCCAAAGACATGGTGAAAGCTTACTGTGCATATGCTTCAGTGTGCCCGTTTGAAAAGATTACTATAATTTTTGCCAACAAATCAATTAGTTTTCAATCTGAGAATGCAGAAACTGTTCATATCATAGACTTTGGTATCCGCTATGGCTTCAAGTGGCCTTCACTTATCAGCATCCTATCAAAACGTCCTGGTGGACCACCCAAGCTTCGCATCACGGGTATAGATCAGCCACAGCCAGGTTTCAGGCCAGAGGAAAGGGTGCTGGAGACGGGGCGTAGGCTTGAACATTATTGCAAGCGTTTCAATGTTCCGTTCGAGTTCAATGCTATTGCAAGAAAATGGGACACCATCAGATTTGAGGACCTCAAGATAGAGAAAAACGAATTTGTGGCTGTGAACTGCATGTTTGAGTTGGAGCATCTACTTGACGAGTCTGTGGTGTTGGATAATCCAAGGGATGCTGTTTTGAGGTTGATTAAGAAGGCAAATCCTGGCATATTTGTGCACAGCATTGTCAACGGCTCCCATGATGTGCCATTCTTTGTGTCACGGTTCCGAGAGGCTCTCTTCCACTACTCTGCACTGTTTAACATGCTTGAAACCAACATTGATCGTGAAGATCCTACGAGGTTGATGTTTGAGAAGGATTTGTTTGGACGAGAGATCATGAACATCGTAGCTTGTGAAGGTTGTGAGAGGGTTGAGAGGCCACAAACATACAAGCAATGGCAGCTTCAAAACATGAGAATTGGGTTTCGGTTACTTCCTTTGGATCAACGAGTCATTGACAGATTAAAGAAGAGGTTGAGACAGGATGCGCACGACACCAATTTCATGCTTGAGGTGGATGGTGGTTGGGTGCTACAAGGTTGGAAGGGTCGAATTCTACATGCTTCCTCTTGTTGGGTTCCGGCATAG 2028 0.4403 MDRRVSSTINIANDEAESFFDESDVSAVLGYIKQMLMEEDTEEKYSMFHDSLALQHTERSFYQVITHQKSSSPSSTHHHHVHSNPSYRVESPEQNVSGCSSDNSTGSYGSTSISSDSQWSVDYNTPPLPNTFTFPDNFAFHSNSTSTTQSSTNTGFGFLDNTLLDSAFQEQFKRGLEQGTSFLPKHTPFIVDTDSTAFSAVPTVVIKTETEESVEEEHFLSVSRRRNRDREEYEADGRIRKTSATYVDESELSELLDKVVLGTGLGKRVPSDTALYQKDETFLANMFGGEVRKSNEEVVDLRALLMLCAQAVASDSPSFAKQLLKQIKQHSSPIGDDTQRLAHYFGNALGACLDGTGFQVYSVLSSKRISAKDMVKAYCAYASVCPFEKITIIFANKSISFQSENAETVHIIDFGIRYGFKWPSLISILSKRPGGPPKLRITGIDQPQPGFRPEERVLETGRRLEHYCKRFNVPFEFNAIARKWDTIRFEDLKIEKNEFVAVNCMFELEHLLDESVVLDNPRDAVLRLIKKANPGIFVHSIVNGSHDVPFFVSRFREALFHYSALFNMLETNIDREDPTRLMFEKDLFGREIMNIVACEGCERVERPQTYKQWQLQNMRIGFRLLPLDQRVIDRLKKRLRQDAHDTNFMLEVDGGWVLQGWKGRILHASSCWVPA 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00012 675 MobiDBLite consensus disorder prediction 87 116 - -
Vium1159g00012 675 MobiDBLite consensus disorder prediction 65 80 - -
Vium1159g00012 675 Pfam GRAS domain family 301 672 IPR005202 -
Vium1159g00012 675 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 215 662 IPR005202 -
Vium1159g00012 675 MobiDBLite consensus disorder prediction 65 116 - -
Vium1159g00012 675 ProSiteProfiles GRAS family profile. 292 673 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00012 Vium-Chr1159 54243 56824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00012 28 675 GRAS Transcription Factor Family AT1G07530 46.454 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium1159g00012 GRAS 1.1e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1159g00012 - - gmx:100780343 868.226