Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11593g00008 ATGACGCAGCGGCGGTTTCTGGACACGGAGCTGAGCATGCCACCGTCGTACGGCAACAACACGCGCGACACGTTCATCAGCGACGCCAACTTCGACACCAACATGGTGATCATTCTGGCGGCTCTACTGTGCGCTCTGATATGCGCGCTGGGGCTGAACTCCATCGCGCGGTGTGCGCTGCGGTGCGGGCGGCGCTTCGGCGACGAGACGGAGGAGCAGGCGGCGGCCCGCCTTGCCGGAACCGGGCTGAAGCGGCGTGAGCTCAGCCGCATCCCGGTGGCGGTGTATGGTGCCTCCGGCGAGACTGTCCCGGCGACAGAGTGCCCCATATGCCTCGGGGAGTTCGAGAAAGGGGACAGGGTTCGAATGCTGCCCAAGTGCAACCACGGATTCCACGTGCACTGCATTGACACGTGGCTCCTCTCCCACTCCTCCTGTCCCAACTGCCGCCACTCCCTCCTCGAGAAACCCGCAGCGCCGGAAAGTGGGTCCCGCCGTAGGAGCGACGTCGTGGTGTTGGTGGAGCCGCCGAGTTGA 537 0.6536 MTQRRFLDTELSMPPSYGNNTRDTFISDANFDTNMVIILAALLCALICALGLNSIARCALRCGRRFGDETEEQAAARLAGTGLKRRELSRIPVAVYGASGETVPATECPICLGEFEKGDRVRMLPKCNHGFHVHCIDTWLLSHSSCPNCRHSLLEKPAAPESGSRRRSDVVVLVEPPS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11593g00008 178 SUPERFAMILY RING/U-box 101 157 - -
Vium11593g00008 178 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Vium11593g00008 178 PANTHER RING-H2 FINGER PROTEIN ATL78 21 158 IPR044602 GO:0016567|GO:0016740
Vium11593g00008 178 SMART ring_2 108 149 IPR001841 -
Vium11593g00008 178 CDD RING-H2_EL5-like 107 150 - -
Vium11593g00008 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 158 IPR013083 -
Vium11593g00008 178 Pfam Ring finger domain 107 150 IPR001841 -
Vium11593g00008 178 SMART FANCL_C_2 104 157 - -
Vium11593g00008 178 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11593g00008 Vium-Chr11593 59383 60782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11593g00008 15 172 C3H Transcription Factor Family AT3G10910 57.229 2.91e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11593g00008 K19040 - gmx:100814602 310.842