Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11593g00006 ATGGGGTGTTTCACTGTATTGAAGAGCAAGAAGAAAAAGTCTGATCCGATTACATATGTTAAACGTGTAAGCCATAATGAGCATGTGCCTACAGTGCTGCCTGAACCTCAAACTCGTACTCGCTCACTCCAGTCTGCTCCTCCTAGTTTTAAGACCAGAGTGAAACCCATTCAACCCATTAGTAAAGTCAATAGCAACAGAACAAGAACATTATCTGCCCCATCAACTCTTGATGCCGCAGAACAAGATGCTTTGGTCTCAATTGAGTATGAGGAACAAGAAGAGTCTAAACACCGAGCTGGATCAATGAAGGAGCGTTCATCTAGCCCACAACCCTTACCACTCCCATCCCCACAGGGTGGTGCTGTATTGAAGGCTATTGGCAGCTTTAAGTCAGTTACAGCTAGTGGTCCTCTATCTGCTTCTGGACCTTTGCCACTTCCACCTACCGGGTCACTTCGGAATTTTCTGTATGATGAAATTGCCACTGCATGTCACAATTTCTCTTCTGATAGATGCATGTCAGAATGTCTTTCATCCACCATATATAAGGCTTCTTTTGGTGATGATGTTTCAAGTTCGAAGAAGTTTGAAGCCACTGTCACACGACTTCACCCATCATCTCAGGGCTTGAAGGAATTCATAAATGAAGTTAACACTCTTGCATCCTTGCAACATCCGAACCTCTGTAAATTGCTAGGATTTCATGCTCGAGAGAGTTCAGAACATAGAATGTTGGTTTATGAGAGGCTATACCATGGAAGCTTGGATCGCTTGTTGTATGGGAGATCTGATGGGCCATTAATAGATTGGAATACAAGAATGAAAATTGCTATATGTGCTGCACAAGGTTTAACTTTCTTGCATGAAGAAGGGCCATTTCAGGCAATGTATAATGAATTCTCAACAGCCAACATACAGATTGACAAAGATTTCAGTGCAAAGCTTTCAGGATATGGTTGTGTTGGACATATTCCGGAGGAAGAGATTTCAAGCAGTTCATCTGCTGTTGGAAACCTATCAATGGAGACACTGGAGAAAGGAATGCTCACCCCAAAGAGCAACGTATGGAGCTTTGGAATATTTCTTCTGGAGCTACTTACAGGAAGAAAGAATCTTGATAGCCGTCACCCAAAGGAAGAGAGGAATTTAGTGAAGTGGAGCCGGCCCTTCCTAGCCGACAACTACCGTCTGTCGTTGATCATGGATCCTCAACTCAAGGGTCGATTTCCTTCTAAAGCAGCAAGAACAATAGCTGACATTGCACAAAGATGCCTTCAAAAGGAGCCATCAGAGAGACCTACCATGAGAACTGTTGTTGAGCATCTGAAGATGATACAGGATTTGAAATACTCATGCAGGTTCCCTCTGCAAGAGCCAGCATCGAACTCTGGAAAACATATGTCAAGATCACCAAGTCTGAATGGCATCATCTGCCCAGTACCAAGGTTGAATTTCTCACCATCACCACCATCTGGGGTTCCAGCAATAGCTGTTTCACCTCCAAGATGGTCTGGTGGAGTGCCCCTTCTACCACCTCGTGCATGTTCTTCCAGTCTCTCTCTGGAGGAGCTTGATAGGCAGGAAAGCCGCAAGTCATCATCCTCAGCCTCTAGAAGGGCTAGTGTTGAAGGATTTTGA 1641 0.4436 MGCFTVLKSKKKKSDPITYVKRVSHNEHVPTVLPEPQTRTRSLQSAPPSFKTRVKPIQPISKVNSNRTRTLSAPSTLDAAEQDALVSIEYEEQEESKHRAGSMKERSSSPQPLPLPSPQGGAVLKAIGSFKSVTASGPLSASGPLPLPPTGSLRNFLYDEIATACHNFSSDRCMSECLSSTIYKASFGDDVSSSKKFEATVTRLHPSSQGLKEFINEVNTLASLQHPNLCKLLGFHARESSEHRMLVYERLYHGSLDRLLYGRSDGPLIDWNTRMKIAICAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLADNYRLSLIMDPQLKGRFPSKAARTIADIAQRCLQKEPSERPTMRTVVEHLKMIQDLKYSCRFPLQEPASNSGKHMSRSPSLNGIICPVPRLNFSPSPPSGVPAIAVSPPRWSGGVPLLPPRACSSSLSLEELDRQESRKSSSSASRRASVEGF 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11593g00006 546 MobiDBLite consensus disorder prediction 28 51 - -
Vium11593g00006 546 MobiDBLite consensus disorder prediction 520 546 - -
Vium11593g00006 546 SUPERFAMILY Protein kinase-like (PK-like) 146 453 IPR011009 -
Vium11593g00006 546 MobiDBLite consensus disorder prediction 91 121 - -
Vium11593g00006 546 Gene3D Phosphorylase Kinase; domain 1 149 249 - -
Vium11593g00006 546 ProSiteProfiles Protein kinase domain profile. 168 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11593g00006 546 MobiDBLite consensus disorder prediction 31 51 - -
Vium11593g00006 546 PANTHER OS01G0588500 PROTEIN-RELATED 97 447 - -
Vium11593g00006 546 Pfam Protein tyrosine and serine/threonine kinase 182 443 IPR001245 GO:0004672|GO:0006468
Vium11593g00006 546 Gene3D Transferase(Phosphotransferase) domain 1 251 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11593g00006 Vium-Chr11593 40527 45671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11593g00006 140 447 Receptor kinase-like Gene Family AT4G02010 37.539 3.02e-57 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Vium11593g00006 PK_Tyr_Ser-Thr 7.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11593g00006 - - gmx:100809117 993.416