Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11593g00005 ATGGGGTGTTTCACTGTATTGAAGAGCAAGAAGAAAAAGTCTGATCCGATTACATATGTTAAACGTGTAAGCCATAATGAGCATGTGCCTACAGTGCTGCCTGAACCTCAAACTCGTACTCGCTCACTCCAGTCTGCTCCTCCTAGTTTTAAGACCAGAGTGAAACCCATTCAACCCATTAGTAAAGTCAATAGCAACAGAACAAGAACATTATCTGCCCCATCAACTCTTGATGCCGCAGAACAAGATGCTTTGGTCTCAATTGAGTATGAGGAGCGTTCATCTAGCCCACAACCCTTACCACTCCCATCCCCACAGGGTGGTGCTGTATTGAAGGCTATTGGCAGCTTTAAGTCAGTTACAGCTAGTGGTCCTCTATCTGCTTCTGGACCTTTGCCACTTCCACCTACCGGGTCACTTCGGAATTTTCTGTATGATGAAATTGCCACTGCATGTCACAATTTCTCTTCTGATAGATGCATGTCAGAATGTCTTTCATCCACCATATATAAGGCTTCTTTTGGTGATGATGTTTCAAGTTCGAAGAAGTTTGAAGCCACTGTCACACGACTTCACCCATCATCTCAGGGCTTGAAGGAATTCATAAATGAAGTTAACACTCTTGCATCCTTGCAACATCCGAACCTCTGTAAATTGCTAGGATTTCATGCTCGAGAGAGTTCAGAACATAGAATGTTGGTTTATGAGAGGCTATACCATGGAAGCTTGGATCGCTTGTTGTATGGGAGATCTGATGGGCCATTAATAGATTGGAATACAAGAATGAAAATTGCTATATGTGCTGCACAAGGTTTAACTTTCTTGCATGAAGAAGGGCCATTTCAGGCAATGTATAATGAATTCTCAACAGCCAACATACAGATTGACAAAGATTTCAGTGCAAAGCTTTCAGGATATGGTTGTGTTGGACATATTCCGGAGGAAGAGATTTCAAGCAGTTCATCTGCTGTTGGAAACCTATCAATGGAGACACTGGAGAAAGGAATGCTCACCCCAAAGAGCAACGTATGGAGCTTTGGAATATTTCTTCTGGAGCTACTTACAGGAAGAAAGAATCTTGATAGCCGTCACCCAAAGGAAGAGAGGAATTTAGTGAAGTGGAGCCGGCCCTTCCTAGCCGACAACTACCGTCTGTCGTTGATCATGGATCCTCAACTCAAGGGTCGATTTCCTTCTAAAGCAGCAAGAACAATAGCTGACATTGCACAAAGATGCCTTCAAAAGGAGCCATCAGAGAGACCTACCATGAGAACTGTTGTTGAGCATCTGAAGATGATACAGGATTTGAAATACTCATGCAGGTTCCCTCTGCAAGAGCCAGCATCGAACTCTGGAAAACATATGTCAAGATCACCAAGTCTGAATGGCATCATCTGCCCAGTACCAAGGTTGAATTTCTCACCATCACCACCATCTGGGGTTCCAGCAATAGCTGTTTCACCTCCAAGATGGTCTGGTGGAGTGCCCCTTCTACCACCTCGTGCATGTTCTTCCAGTCTCTCTCTGGAGGAGCTTGATAGGCAGGAAAGCCGCAAGTCATCATCCTCAGCCTCTAGAAGGGCTAGTGTTGAAGGATTTTGA 1602 0.4438 MGCFTVLKSKKKKSDPITYVKRVSHNEHVPTVLPEPQTRTRSLQSAPPSFKTRVKPIQPISKVNSNRTRTLSAPSTLDAAEQDALVSIEYEERSSSPQPLPLPSPQGGAVLKAIGSFKSVTASGPLSASGPLPLPPTGSLRNFLYDEIATACHNFSSDRCMSECLSSTIYKASFGDDVSSSKKFEATVTRLHPSSQGLKEFINEVNTLASLQHPNLCKLLGFHARESSEHRMLVYERLYHGSLDRLLYGRSDGPLIDWNTRMKIAICAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLADNYRLSLIMDPQLKGRFPSKAARTIADIAQRCLQKEPSERPTMRTVVEHLKMIQDLKYSCRFPLQEPASNSGKHMSRSPSLNGIICPVPRLNFSPSPPSGVPAIAVSPPRWSGGVPLLPPRACSSSLSLEELDRQESRKSSSSASRRASVEGF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11593g00005 533 MobiDBLite consensus disorder prediction 28 51 - -
Vium11593g00005 533 PANTHER OS01G0588500 PROTEIN-RELATED 80 434 - -
Vium11593g00005 533 ProSiteProfiles Protein kinase domain profile. 155 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11593g00005 533 Gene3D Transferase(Phosphotransferase) domain 1 238 442 - -
Vium11593g00005 533 MobiDBLite consensus disorder prediction 31 51 - -
Vium11593g00005 533 Pfam Protein tyrosine and serine/threonine kinase 169 430 IPR001245 GO:0004672|GO:0006468
Vium11593g00005 533 Gene3D Phosphorylase Kinase; domain 1 136 236 - -
Vium11593g00005 533 MobiDBLite consensus disorder prediction 507 533 - -
Vium11593g00005 533 SUPERFAMILY Protein kinase-like (PK-like) 133 440 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11593g00005 Vium-Chr11593 40527 45671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11593g00005 127 434 Receptor kinase-like Gene Family AT4G02010 37.539 1.77e-57 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Vium11593g00005 PK_Tyr_Ser-Thr 7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11593g00005 - - gmx:100809117 964.14