Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11593g00001 ATGATGCAATTCAGCGTGTGTGTGTTGTTTCTGGTTCTTCTTGCACCGCTTATGTTGGTGGTTTCTGCGGAAACTGGTTTCAATGATGATGTTTTGGGTTTGATCGTGTTCAAGGCTGGTTTGGAAGATCCCAAAAGGAAACTCTCTTCTTGGAATGAGGATGATAACAGTCCTTGCATTTGGGAAGGTGTGAAGTGTGATCCTTCATCCAATAGGGTCACTGCTCTTGTTCTTGACGGGTTCTCTCTTTCTGGGCATGTTGATAGGGGCTTATTGAGGTTGCAGTTCCTTCAAATTCTCTCCCTTTCAAGGAACAACTTCACAGGGCCTATAAACCCTGATCTTCCTGGCCTTGGGAGTTTACAAACTGTGGACTTCAGTGACAATAACCTCTCTGGGGAGATCCCAGAAGGGTTTTTCCAACAATGTGGCTCTCTCAGGACAGTTTCATTTGCCAAGAACAACCTCACAGGTAAAATTCCCGAGTCCTTGAGTTCCTGCTCCAATTTGGCAACTGTTAACTTCTCCTCTAATCAGCTCCACGGGGAATTGCCTAATGGAGTGTGGTTCTTGAGGGGGCTACAGTCACTTGATCTGTCGGACAACATGCTGGAGGGAGAAATTCCTGAAGGCATTCAGAATCTGTATGATATGAGGGAGTTGAGTCTCCAGAGGAACAGGTTTAGGGGAAAGCTTCCTGCGGATATTGGAGGCTGCTTACTTCTAAAATCACTTGATTTGAGTGGTAATTTTCTCTCTGGGGAACTCCCTCAGTCAATGCAGAGACTCACTTCTTGCACATCACTTAGTTTGCAGGGAAATTCATTCACAGGGGTCATTCCTGACTGGATTGGGGAATTGAAGAACCTAGACATGCTGGACCTTTCTGCCAATTCATTTTCTGGTTGGATTCCTAAGTCATTAGGAAATCTTGACTCTTTACATAGATTGAATTTGTCCAGGAATCAGTTGACAGGAAACCTGCCTGATTCTATGCTGAACTGCAACAAGCTTTTGGCTTTTGACATCAGCCACAATCACTTGGCAGGCCATGTTCCTTCATGGATTTTTAAGATGGGTGTGCAAAGCATATCTCTTTCTGAGAATGGCTTCAGCAAGGGCAATTATCCTGCACTTACGTCTACACCTACATCTTATCATGGTCTTGAAGTTCTGGATTTGTCATTCAATGCATTCTCTGGTGTGCTTCCATCTGGCATTGGAGGACTTAGTAGCCTACAAGTCTTCAATATCTCTGCTAACAATATCTCTGGTCCTATTCCTGTGGGTATAGGTGAACTTAAGTCTTTGTACATTATTGACCTAAGTGACAACAAGCTTCATGGAAGCATTCCTTCCGAAGTAGAAGGGGCAATTTCACTCAGGGAGCTAAGGCTGCAAAAGAACTTCCTAGGTGGGAGAATTCCAGCCCAAATTGACAAGTGTTCGTCTCTAACATTTTTGATTCTTTCTCACAACAAGCTTACTGGTTCAATCCCTGCAACCATTGCAAACCTCACCAATCTTCAATATGTAGATTTGTCATGGAATGAACTCTCTGGAAGTTTACCCAAGGAGTTAACAAATCTTTCTCATCTTTTCTCATTCAATGTATCCAACAACCACCTTGAAGGTGAACTACCTGTGGGTGGCTTCTTCAACACCATCTCCTCCTCATCAGTCTCCGATAACCCATTGCTGTGCGGTTCTGTTGTCAACCACTCTTGTCCGTCTGTTCATCCTAAACCTATTGTCCTGAACCCCAATTCTTCAGGTTCCAACTCCAGCATTTCCTCACAGACCCATCGGCATAAAATCATACTAAGTATCTCTGCTCTTATTGCTATTGGAGCAGCTGCTTTTATCGCCATTGGTGTGGTGGCTATTACTGTCCTAAATATCCACGTGCGTTCCTCAATGGAGCGTATGCCTGCTACATTTGCATTGTCTGGGGGAGAGGACTATAGTGGTTCGCCTGCAAATGATCCAAACTATGGCAAGCTTGTCATGTTTTCTGGTGATGCAGATTTTGCTGATGGAGCACATAACCTTCTCAATAAGGAAAGTGAAATAGGCCGTGGTGGATTTGGAGTTGTTTATCGAACTTTTCTTCGCGATGGGCACGCAGTTGCAATCAAGAAGCTTACAGTCTCCAGTTTGATCAAGTCCCAAGAAGACTTTGAAAGAGAAATTAAAAAGCTTGGAAAGATCAGGCACTCCAATCTTTTGGCACTTGAAGGTTATTATTGGACATCCTCCTTGCAACTCCTTATTTATGAGTACCTCTCAACTGGGAGTTTGCATAAACTTCTGCATGATGACAACAGCAAAAACGTCTTCTCATGGCCACAAAGGTTCAAGATTATTCATGGCATGGCAAAAGGGTTGGCCCATTTGCATCAAATGAACATAATCCACTACAATCTCAAATCAACCAATGTTCTCATTGATTGTTCTGGTGAGCCAAAGGTTGGAGATTTCGGCTTGGTGAAACTACTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTAGGGTACATGGCGCCAGAATTCGCTTGCCGGACGGTTAAGATCACCGAGAAGTGTGACATATATGGTTTTGGGATCCTGGTGCTGGAGGTGGTGACAGGAAAAAGACCCGTGGAATACATGGAGGATGATGTGGTGGTTCTCTGTGACATGGTTAGGGGTGCATTGGAAGAAGGAAAGGTGGAGCAATGTGTTGATGGAAGGCTCCTCGGTAACTTTGCTGCAGAGGAAGCAATTCCTGTGATAAAATTGGGGTTGATTTGTGCATCACAAGTGCCATCAAACCGTCCAGATATGGCTGAGGTAGTCAACATACTAGAGTTAATCCAATGCCCTTCAGAAGGACTACAGGAATTAGAATGA 2907 0.4403 MMQFSVCVLFLVLLAPLMLVVSAETGFNDDVLGLIVFKAGLEDPKRKLSSWNEDDNSPCIWEGVKCDPSSNRVTALVLDGFSLSGHVDRGLLRLQFLQILSLSRNNFTGPINPDLPGLGSLQTVDFSDNNLSGEIPEGFFQQCGSLRTVSFAKNNLTGKIPESLSSCSNLATVNFSSNQLHGELPNGVWFLRGLQSLDLSDNMLEGEIPEGIQNLYDMRELSLQRNRFRGKLPADIGGCLLLKSLDLSGNFLSGELPQSMQRLTSCTSLSLQGNSFTGVIPDWIGELKNLDMLDLSANSFSGWIPKSLGNLDSLHRLNLSRNQLTGNLPDSMLNCNKLLAFDISHNHLAGHVPSWIFKMGVQSISLSENGFSKGNYPALTSTPTSYHGLEVLDLSFNAFSGVLPSGIGGLSSLQVFNISANNISGPIPVGIGELKSLYIIDLSDNKLHGSIPSEVEGAISLRELRLQKNFLGGRIPAQIDKCSSLTFLILSHNKLTGSIPATIANLTNLQYVDLSWNELSGSLPKELTNLSHLFSFNVSNNHLEGELPVGGFFNTISSSSVSDNPLLCGSVVNHSCPSVHPKPIVLNPNSSGSNSSISSQTHRHKIILSISALIAIGAAAFIAIGVVAITVLNIHVRSSMERMPATFALSGGEDYSGSPANDPNYGKLVMFSGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEDFEREIKKLGKIRHSNLLALEGYYWTSSLQLLIYEYLSTGSLHKLLHDDNSKNVFSWPQRFKIIHGMAKGLAHLHQMNIIHYNLKSTNVLIDCSGEPKVGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVVNILELIQCPSEGLQELE 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11593g00001 968 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 679 761 - -
Vium11593g00001 968 Gene3D Ribonuclease Inhibitor 246 306 IPR032675 -
Vium11593g00001 968 Pfam Leucine rich repeat 460 519 IPR001611 GO:0005515
Vium11593g00001 968 Pfam Leucine rich repeat 388 447 IPR001611 GO:0005515
Vium11593g00001 968 Pfam Leucine rich repeat 267 324 IPR001611 GO:0005515
Vium11593g00001 968 SUPERFAMILY Protein kinase-like (PK-like) 686 958 IPR011009 -
Vium11593g00001 968 SUPERFAMILY L domain-like 46 371 - -
Vium11593g00001 968 Gene3D Phosphorylase Kinase; domain 1 675 761 - -
Vium11593g00001 968 SMART LRR_typ_2 191 214 IPR003591 -
Vium11593g00001 968 SMART LRR_typ_2 434 458 IPR003591 -
Vium11593g00001 968 SMART LRR_typ_2 530 554 IPR003591 -
Vium11593g00001 968 SMART LRR_typ_2 386 409 IPR003591 -
Vium11593g00001 968 SMART LRR_typ_2 311 335 IPR003591 -
Vium11593g00001 968 SMART LRR_typ_2 287 310 IPR003591 -
Vium11593g00001 968 SMART LRR_typ_2 118 142 IPR003591 -
Vium11593g00001 968 SMART LRR_typ_2 215 239 IPR003591 -
Vium11593g00001 968 SMART LRR_typ_2 506 529 IPR003591 -
Vium11593g00001 968 SMART LRR_sd22_2 434 457 - -
Vium11593g00001 968 SMART LRR_sd22_2 191 214 - -
Vium11593g00001 968 SMART LRR_sd22_2 287 313 - -
Vium11593g00001 968 SMART LRR_sd22_2 506 532 - -
Vium11593g00001 968 ProSiteProfiles Protein kinase domain profile. 685 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11593g00001 968 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 28 306 - -
Vium11593g00001 968 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vium11593g00001 968 Pfam Protein kinase domain 686 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11593g00001 968 Gene3D Ribonuclease Inhibitor 307 582 IPR032675 -
Vium11593g00001 968 SUPERFAMILY L domain-like 289 561 - -
Vium11593g00001 968 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 191 955 - -
Vium11593g00001 968 Gene3D Ribonuclease Inhibitor 27 245 IPR032675 -
Vium11593g00001 968 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515
Vium11593g00001 968 Pfam Leucine Rich Repeat 242 262 IPR001611 GO:0005515
Vium11593g00001 968 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 762 963 - -
Vium11593g00001 968 CDD STKc_IRAK 691 957 - -
Vium11593g00001 968 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Vium11593g00001 968 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 307 580 - -
Vium11593g00001 968 Gene3D Transferase(Phosphotransferase) domain 1 762 963 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11593g00001 Vium-Chr11593 8470 13099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11593g00001 1 965 Receptor kinase-like Gene Family AT5G01890 61.317 0.0 1125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vium11593g00001 Pkinase 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11593g00001 - - gmx:100790365 1719.52