Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11580g00001 ATGGTGTTCGTCTTTCCAACGCTTCTGTCCATGAAGCTCAAACCTTTATCGATGCTTCTTGTAATGTTGTTTTGTGCATTTTCACATTATGATGCTGCCAGTTCTTCTGATTCGGAAGCAAATGCTTTGTTGAAGTGGAAAGGCAGCCTTGACAGCCTCAGTCAAGCTTCTCTCTCTTCATGGAATGGCAGTAATCCTTGCAACTGGCTGGGAATAGAATGTGATAATTCCCATTCTGTTTCTCACATAAATCTTACACGTGTTGGATTGAAAGGTACACTTCAAACTTTTAACTTCTCATCACTTCCAAACATTCTCGGTCTGAATATGAGTTTCAACTCCTTGTCTGGAAGTATTCCTCAACAGATTGAAAAGTTGTCCAATCTCAGCGCGCTTGATTTGTCTACCAATAAACTCTCCGGTAACATTCCCAAAACCATCTGTAATCTTTCTAAACTAAAGTATCTGAATCTTAGTGTCAATGGTCTCTCTGGTTCTATTCCTAATGAAGTGGGCCATCTTCAGTCTCTTCTCACATTCGATATATTTACCAACAACCTCTCTGGGCCAATCCCTCCTACCTTAGGAACTCTGCCCCTTTTAGAATCCATTCACCTTTTTGAAAATAAACTCTCTGGACCCATTCCTGCCAGTATTGGGAATCTGTCCAGGCTCACCATGTTATCTTTATCTTCAAATCAACTCACCGGATCCATCCCTCCCCATATCGGAAATTTATCAAACGCCAAGGTCATATGTTTTATTGGGAATGAACTTAGTGGCGAGATTCCAGTAGAAATTGAGAAGCTTACTGGTCTCGAATGTTTGCAACTTGCTGATAATAATTTTATAGGCCATATACCTCAGAACATTTGCCTCGGCGGAAACATGAAATACTTCACAGCTGGTAATAACAATTTCACTGGCCCAATTCCACAGACTTTGAAGAAATGCTACAGCCTTAAAAGACTCAGGCTTCAGCAAAACCATCTAACTGGGGATATAACAAACTTTTTTGATGTCCTTCCAAACTTGAACTACATCGATCTCAGTGAAAATAATTTTCACGGTAGTCTTTCACCTACTTGGGGAAAATTTCGCAGCCTCACAAGCTTCATGATTTTCAAAAACAATTTGTCAGGTGTTATTCCACCAGAACTAGGTGGCGCAACCAAATTACAGCTGCTTGATCTATCCTCAAACCATCTTACAGGAAACATTCCAGAAGATTTATGCAACTTGACCCTCTTGTTTGATCTTTCAATCAACAACAATAATCTTTCTGGAAATGTTCCCTCGAAAATAGAATCACTGGAGGCACTTAAAATTTTGGAGCTCGGGTCAAATGATTTCACAGGCTTAATCCAGAAAAAAATTGGAAATTTGCGCAATTTATTGTACTTGAATCTGAGCCAGAATAAATTTGAGGGAAATATTCCTTCAGAGCTTGGCAATTTGAATTATCTCTCACGTCTTGATCTCAGTGGAAATTTGTTGAGTGAAAGATTACCACCAACGCTTGGTGGAATAAAAGGCTTAGAAACATTGAATCTATCCCACAATAGTCTTTCAGGTGGTCTCTCTAGCTTACATGATATGATGAGTTTGACATCTTTTGACATATCATACAACCAGTTTGAGGGTCCACTTCCTGACATTCCAGTCTTCCAGAATGCCACCATTGAAGCTCTGAGAAATAATACAGGCCTGTGTGGCAATGTCACAGGCTTGGAGCCTTGCCCGAAAGTAAGTGGGAAATCTCATAATAATACTACAAGGAAAGTGCTAATAGCAGTTTTACCCGTTACTGTGGCCATTCTAATGCTTGCACTATTTCTTTTTGGTGTCTCCTACAATTTATGCCGAACTTCAAACGAAGAACAAGAGAAGGCTCTAAGTTCACGATCTGCCAGCATGTTTCCAGCATGGAGTTTCGGAGGCAAAATTATGTTTGAGAATATTATTGAAGCCACCGAATATTTTGATGACAAATATCTCATTGGAGTTGGAGGTCAAGGTCGTGTTTACAAAGCAATATTACCCACAGGTGAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTTCAAACGGAGAAGTCCTCAATCAGAAAGCTTTCACAAGGGAGATCCAGGCTTTGACAGAAATCCGACATCGTAACATTGTAAAGTTTCATGGGTTTTGTTCGCATTCACAATATTCACTTTTGGTGTGCGAATTCCTAGAGAGGGGCGATGTGAAGAAGATTTTGAAAGATGATGAACAAGCATCTGCATTTGATTGGAATAAAAGGGTGGATGCTGTTAAAGACGTGGCAAATGCTTTATGCTATATGCACCATGATTGCTTACCTCCAATTGTCCATCGTGATATATCAAGCAAAAATGTTCTTTTGGATTCAGAATATGTAGCTCATGTCTCAGACTTCGGAACAGCTAAGCTTCTTGATCATAGTTCAGCCAATTGGACATCATTTGCAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAACGAGAAATGTGACGTGTATAGTTTTGGGGTCTTGGCATTGGAAATATTATTTGGAAGGCACCCTGGTGATGTTACATCTTTAATGCAATCTTCTTTATCAACTGGTATGATCTCAACGCTTGATCATATGGCATTGATGGATAACTTGGATGAACGTCTACCTGTTCCAACAAATTCTACTTTGAAAGAGGTGGTATCAATTCTCAAGACAGCAATTTCTTGCCTGACTGAAAGTCCACGATCCCGACCAACCATGAAGCTCGTAACCAACGAGCTTGCATTGTCGAGGTCATCTTCAATGTCACACACAGAGCTGAAAGACTGA 2850 0.4007 MVFVFPTLLSMKLKPLSMLLVMLFCAFSHYDAASSSDSEANALLKWKGSLDSLSQASLSSWNGSNPCNWLGIECDNSHSVSHINLTRVGLKGTLQTFNFSSLPNILGLNMSFNSLSGSIPQQIEKLSNLSALDLSTNKLSGNIPKTICNLSKLKYLNLSVNGLSGSIPNEVGHLQSLLTFDIFTNNLSGPIPPTLGTLPLLESIHLFENKLSGPIPASIGNLSRLTMLSLSSNQLTGSIPPHIGNLSNAKVICFIGNELSGEIPVEIEKLTGLECLQLADNNFIGHIPQNICLGGNMKYFTAGNNNFTGPIPQTLKKCYSLKRLRLQQNHLTGDITNFFDVLPNLNYIDLSENNFHGSLSPTWGKFRSLTSFMIFKNNLSGVIPPELGGATKLQLLDLSSNHLTGNIPEDLCNLTLLFDLSINNNNLSGNVPSKIESLEALKILELGSNDFTGLIQKKIGNLRNLLYLNLSQNKFEGNIPSELGNLNYLSRLDLSGNLLSERLPPTLGGIKGLETLNLSHNSLSGGLSSLHDMMSLTSFDISYNQFEGPLPDIPVFQNATIEALRNNTGLCGNVTGLEPCPKVSGKSHNNTTRKVLIAVLPVTVAILMLALFLFGVSYNLCRTSNEEQEKALSSRSASMFPAWSFGGKIMFENIIEATEYFDDKYLIGVGGQGRVYKAILPTGEVVAVKKLHSVSNGEVLNQKAFTREIQALTEIRHRNIVKFHGFCSHSQYSLLVCEFLERGDVKKILKDDEQASAFDWNKRVDAVKDVANALCYMHHDCLPPIVHRDISSKNVLLDSEYVAHVSDFGTAKLLDHSSANWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGVLALEILFGRHPGDVTSLMQSSLSTGMISTLDHMALMDNLDERLPVPTNSTLKEVVSILKTAISCLTESPRSRPTMKLVTNELALSRSSSMSHTELKD 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11580g00001 949 Pfam Protein kinase domain 663 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11580g00001 949 ProSitePatterns Tyrosine protein kinases specific active-site signature. 785 797 IPR008266 GO:0004672|GO:0006468
Vium11580g00001 949 SUPERFAMILY L domain-like 316 572 - -
Vium11580g00001 949 Gene3D Phosphorylase Kinase; domain 1 621 739 - -
Vium11580g00001 949 SMART LRR_typ_2 126 150 IPR003591 -
Vium11580g00001 949 SMART LRR_typ_2 342 366 IPR003591 -
Vium11580g00001 949 SMART LRR_typ_2 222 246 IPR003591 -
Vium11580g00001 949 SMART LRR_typ_2 391 414 IPR003591 -
Vium11580g00001 949 SMART LRR_typ_2 270 294 IPR003591 -
Vium11580g00001 949 SMART LRR_typ_2 510 537 IPR003591 -
Vium11580g00001 949 SMART LRR_typ_2 462 486 IPR003591 -
Vium11580g00001 949 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Vium11580g00001 949 FunFam Uncharacterized protein 292 589 - -
Vium11580g00001 949 SUPERFAMILY L domain-like 37 333 - -
Vium11580g00001 949 PANTHER LEUCINE RICH REPEAT KINASE 2 195 937 - -
Vium11580g00001 949 FunFam Nuclear pore complex protein NUP107 36 191 - -
Vium11580g00001 949 Gene3D Ribonuclease Inhibitor 37 188 IPR032675 -
Vium11580g00001 949 Gene3D Ribonuclease Inhibitor 189 292 IPR032675 -
Vium11580g00001 949 SMART LRR_sd22_2 414 440 - -
Vium11580g00001 949 SMART LRR_sd22_2 126 152 - -
Vium11580g00001 949 SMART LRR_sd22_2 222 248 - -
Vium11580g00001 949 ProSiteProfiles Protein kinase domain profile. 661 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11580g00001 949 FunFam Leucine-rich repeat receptor protein kinase MSP1 623 739 - -
Vium11580g00001 949 Gene3D Ribonuclease Inhibitor 293 589 IPR032675 -
Vium11580g00001 949 ProSiteProfiles Leucine-rich repeat profile. 392 415 IPR001611 GO:0005515
Vium11580g00001 949 PRINTS Leucine-rich repeat signature 510 523 - -
Vium11580g00001 949 PRINTS Leucine-rich repeat signature 129 142 - -
Vium11580g00001 949 FunFam MDIS1-interacting receptor like kinase 2 740 940 - -
Vium11580g00001 949 SUPERFAMILY Protein kinase-like (PK-like) 642 934 IPR011009 -
Vium11580g00001 949 Gene3D Transferase(Phosphotransferase) domain 1 740 948 - -
Vium11580g00001 949 FunFam MDIS1-interacting receptor like kinase 2 isoform A 192 291 - -
Vium11580g00001 949 Pfam Leucine rich repeat 440 499 IPR001611 GO:0005515
Vium11580g00001 949 Pfam Leucine Rich Repeat 392 414 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11580g00001 Vium-Chr11580 3189 6291 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11580g00001 99 833 Receptor kinase-like Gene Family AT4G08850 43.935 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium11580g00001 Pkinase 3.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11580g00001 - - gmx:100809509 1411.74