Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11564g00005 ATGGCTTCTCCATGGGTTCAAGAGCTCCATATTCATCACTTCACCATTCCTGTAACCATTGATAGAATGTCTTCTGTTATGCCGTCAAGGCCTATTCCTGTTAAACCAGGTGACACTTTATACCTTTCCAATCTCGATGACATGATTGGAGCTCGTGTTTTCACACCTACAGTGTATTTTTATCAGTTACACAGCACTGGCTCTTCCCAAAAACCTGTCACAAAAATACTACAATGTGCTCTCGCTGATGTTTTAGTGCCTTACTACCCTTTATCAGGCAGGCTCAGAGAGACGAAGAATGGTAAACTAGAAGTGTTTTTTGGACCGGAGCAAGGAGCACTCGTTGTTGAGGCACGATCTGATGTTGCCTTAACTGAATTAGGAGACCTCACAGCTCCGAACCCGGCTTGGGAGCCTTTGATCTTCAAGTTTCCCAATGAAGAACAATACAAAGTCCTGGAAATGCCACTGGTCATTGCTCAGGTGACCCTTTTCCGATGCGGTGGTTTTAGCCTTGGTTTGAGGCTTTGCCATTGCATCTGTGATGGAATGGGAGCCATGCAATTTCTGGGTGCATGGGCTGCTACTGCAAGAACAGGGATGCCGGTTATAGACCCCGTGCCTTGTTGGGACAGGGAAGTTTTCCGGCCACGTGATCCACCGGTGGTTAAATTTCCTCACTTGGAGTTTATGAGAATTGAAGAGGGCTCCAACCTAACAATGACACTGTGGCAAACCAAACCGGTTCAGAAGTGTTACAGGATCAAGCGCGAGTTCCAGAATCGCGTGAAAGCTCTTGCTCAGCCATATGACGCTGCAGGTTGCACCACTTTTGATGCCATGGCAGCTCATATATGGAGATCATGGGTGAAAGCTCTTGATGTGAGGCCACTAGATTACCAGCTTAGGTTAACGTTTTCGGTGAATGCTCGGCACAAGCTGAGAAACCCAGCACTGAAAGAAGGGTTTTATGGAAATGTGGTGTGTGTTGCATGCACAAGAAGCACTGTCTCTGAGCTTGTGCATGGAGAATTACCTGAGACAACCCTTTTGGTTCGAGAGGCCAGACAGAGTGTGTCCGAGGAGTATTTGAGATCTACAGTGGATTATGTCGAAGTGGATAGGCCAAGACAACTTGAGTTTGGTGGGAAACTAACAATAACTCAATGGACAAGGTTCTCAATATACAAGTGTGCAGATTTTGGGTGGGGTAGGCCACTCTATGCTGGTCCTATAGATTTAACACCCACACCTCAAGTTTGTGTCTTTCTTCCTGAAGGAGAAGCTGATTGCAGTGATGCTTCTATGATCGTGTGCATATGCTTGCCTGAGTCTGCTGCTCAAAAGTTTACACAAGCTTTGTTGCTCCATTCTGATTTTTGA 1383 0.462 MASPWVQELHIHHFTIPVTIDRMSSVMPSRPIPVKPGDTLYLSNLDDMIGARVFTPTVYFYQLHSTGSSQKPVTKILQCALADVLVPYYPLSGRLRETKNGKLEVFFGPEQGALVVEARSDVALTELGDLTAPNPAWEPLIFKFPNEEQYKVLEMPLVIAQVTLFRCGGFSLGLRLCHCICDGMGAMQFLGAWAATARTGMPVIDPVPCWDREVFRPRDPPVVKFPHLEFMRIEEGSNLTMTLWQTKPVQKCYRIKREFQNRVKALAQPYDAAGCTTFDAMAAHIWRSWVKALDVRPLDYQLRLTFSVNARHKLRNPALKEGFYGNVVCVACTRSTVSELVHGELPETTLLVREARQSVSEEYLRSTVDYVEVDRPRQLEFGGKLTITQWTRFSIYKCADFGWGRPLYAGPIDLTPTPQVCVFLPEGEADCSDASMIVCICLPESAAQKFTQALLLHSDF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11564g00005 460 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 32 450 - -
Vium11564g00005 460 Gene3D - 15 232 IPR023213 -
Vium11564g00005 460 Gene3D - 238 454 IPR023213 -
Vium11564g00005 460 Pfam Transferase family 17 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11564g00005 Vium-Chr11564 42291 43867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11564g00005 30 455 Monolignol Biosynthesis Gene Families AT5G48930 30.664 5.41e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11564g00005 K15400 - gmx:100802814 855.899