Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11564g00001 ATGCAATCTCAAACTTCTGATACGTTTCCCTCTCACTGTGAAAATGAAACAATTTCCTGCTATGACCCGGCATTTTACTACACCAGACCCTTTTCCATTCACTCTGAAAGCAACCCAACATGGAAACAAGAAAACAACACTGACCTTCCTCCTTTGTCCTTTTTCCACTTTCCTTCTCCTCCCTTTGAAGACTCTCGTATTTCCCTCCAACAACACCACGATTTCCTCCTTCCGTTTCACCATAACCCTCCACCTCAAAACCCCGACCCTCAACCTGTTAGTCTTTCCGTGGAGACTTCTGCTAAGAAGAATATCCAAACCCCCAGAAAAAGACTTGGCAAGAGAGATAGACACAGCAAGATCAGCACCGCAGGGGGACTGAGGGATAGGAGAATGAGACTTTCCCTTGATGTTGCAAGGAGGTTTTTCGGTTTGCAAGATATGCTGGGCTTTGACAAAGCTAGCAAGACCGTGGAGTGGCTGCTGAACCAAGCAAAAGCTGAGATCAATCGTCTAGCGAAGGAAAAAAAGAAGCAGAAGAAGAGTGTTCACCGCAGTTGCTGCAGTGCTGGTTCGGAATGTGAAGAAGGTGTGTCCAGTCTTGATGAGGTTGCAGGGAGTAGAAACGAAGAAGAAGCAGGAGAAGAGAGAGTGGACAAAGTGATGAAGAGAAGGGTTAAGCATTCTAGGAAGATCGGTGCATTCCATCCTCTTGCAAGGGAGTGCAGGGAAAGGGCAAGAGAGAGGGCAAGAGAGAGGACAAGAGAAAAGATGAGAAGTCGTGGCCTGGCTGAAGAATCAAAGCCATGTAGAGAGGAAGAAAATCAAAATCTAATCCAATTGGGTTCTTGGAAACCCTCAGAAACTGGAGAAGAATTTGTTACCAAGAGCCACGGTTTGCATCCTTCCTTGGACGTGATCAATGAGGGTAAAGAACACAGCTACCACGCAAAGGAGCATGATGATGATGATTCTTTGGTTATTTTGAGCAAATGGAGCCCCTCCTTGATCTTCAATAACTATGGATTCTCTCACGAACACCAATTTGCAGAATTTCAGTCCTTGGGAAAGCCATGGGAGGCCTAG 1086 0.4604 MQSQTSDTFPSHCENETISCYDPAFYYTRPFSIHSESNPTWKQENNTDLPPLSFFHFPSPPFEDSRISLQQHHDFLLPFHHNPPPQNPDPQPVSLSVETSAKKNIQTPRKRLGKRDRHSKISTAGGLRDRRMRLSLDVARRFFGLQDMLGFDKASKTVEWLLNQAKAEINRLAKEKKKQKKSVHRSCCSAGSECEEGVSSLDEVAGSRNEEEAGEERVDKVMKRRVKHSRKIGAFHPLARECRERARERARERTREKMRSRGLAEESKPCREEENQNLIQLGSWKPSETGEEFVTKSHGLHPSLDVINEGKEHSYHAKEHDDDDSLVILSKWSPSLIFNNYGFSHEHQFAEFQSLGKPWEA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11564g00001 361 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 100 359 IPR005333 GO:0003700
Vium11564g00001 361 Pfam TCP family transcription factor 113 260 IPR017887 -
Vium11564g00001 361 MobiDBLite consensus disorder prediction 249 273 - -
Vium11564g00001 361 MobiDBLite consensus disorder prediction 101 126 - -
Vium11564g00001 361 ProSiteProfiles R domain profile. 240 257 IPR017888 -
Vium11564g00001 361 Coils Coil 155 182 - -
Vium11564g00001 361 ProSiteProfiles TCP domain profile. 114 172 IPR017887 -
Vium11564g00001 361 MobiDBLite consensus disorder prediction 249 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11564g00001 Vium-Chr11564 3178 5039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11564g00001 89 254 TCP Transcription Factor Family AT3G18550 43.784 4.35e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium11564g00001 TCP 5.7e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11564g00001 - - pvu:PHAVU_009G200600g 514.227