Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11563g00004 ATGGTGGTCCTGGACACACCTCCTCAAGGGCTCAATTCAAAGTCACACGTCATTGATTATTATGTCAACATTCTACAAACAGTTCTCGGCAGTGAGAAAGATGCTCAGATGAGTATATATGATGCTTCGTGGAACACCCACTTCGGGTTTTGTTGTGACGTTGATGAAGAAATATCCTCCCAGCTGGCCAGTTTGCCTGGGGTGTTGTTGGTTAGGCCTGACCCGGATTTCAATTCTTTGAGAAAGGACTATAGTTTATCAAGGGACCAGGTAGTTAACCCGTCAGGATTACAAAATATTACCAATATGTTGTTTCCTTCGGGAAATTCTAAGCATTGGCTTGTTAAAATGGATAAACCTGGGGTTGAGGTTGTTACCAAGGCTCAGATTGTCGATTACTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGACGGATGCACAAATGTGTATATATCATGTCTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGACGAGGACTGTGCTCAAGAGCTAGCTGGTTTGCCAGGTGTCTTATCAGTTCAGCCAGATAACAGTTTTGAGTCTGAAAATAAGGATTATGCAGGTAGTACCTTAGAAAATAGTTGGAATATTTCCAACTCTTCTGAAGCAAGTCATGAAGCGCCCTTGAAAACAAAGAAATTGTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGTGAGCTAGTTGAAGTTAAAGTTATTATTGACAAGATTTCAAAAAGATCAAAGGGTTATGCATTTGTTGAATACACCACAGAGGAAGCTGCCAGTGCTGCGCTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTAACCCGCCAAGATACAACAGGAATCGTGCTGAATCATCAAGTTGA 948 0.4156 MVVLDTPPQGLNSKSHVIDYYVNILQTVLGSEKDAQMSIYDASWNTHFGFCCDVDEEISSQLASLPGVLLVRPDPDFNSLRKDYSLSRDQVVNPSGLQNITNMLFPSGNSKHWLVKMDKPGVEVVTKAQIVDYYAQILTKVMGNETDAQMCIYHVSWKTNFGFCCELDEDCAQELAGLPGVLSVQPDNSFESENKDYAGSTLENSWNISNSSEASHEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNRNRAESSS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11563g00004 315 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 78 IPR037045 -
Vium11563g00004 315 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 104 192 IPR037045 -
Vium11563g00004 315 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 2 85 IPR039206 GO:0016554
Vium11563g00004 315 FunFam Organelle RRM domain-containing protein 1, chloroplastic 191 315 - -
Vium11563g00004 315 FunFam Organelle RRM domain-containing protein 1, chloroplastic 101 190 - -
Vium11563g00004 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 301 IPR000504 GO:0003723
Vium11563g00004 315 Gene3D - 193 315 IPR012677 -
Vium11563g00004 315 SMART rrm1_1 224 297 IPR000504 GO:0003723
Vium11563g00004 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 291 IPR000504 GO:0003723
Vium11563g00004 315 SUPERFAMILY RNA-binding domain, RBD 210 310 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11563g00004 Vium-Chr11563 103 2908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11563g00004 215 310 C2H2 Transcription Factor Family AT2G19380 31.250 7.38e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11563g00004 - - vun:114191397 601.282