Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11563g00003 ATGGAGCTTCTCTCTGTGACTGGCTCACTCTGCAAAGGCCAAACATTTTCCTTTCAGAAACCAAAGACATCCCAAATTCATGAACTTCCAATAAACGTAAGATTACCCGACACAATCAACCATTCCAATCTTTCTTCTTCTTCTTCTTCATGTAATTGCTCTATTACTAGGGTAGCAGCAACAACATACCCTTCCTTCAATTCTTCCACCACACAGAACCGCCATTGGATGGTGGTCCTGGACACACCTCCTCAAGGGCTCAATTCAAAGTCACACGTCATTGATTATTATGTCAACATTCTACAAACAGTTCTCGGCAGTGAGAAAGATGCTCAGATGAGTATATATGATGCTTCGTGGAACACCCACTTCGGGTTTTGTTGTGACGTTGATGAAGAAATATCCTCCCAGCTGGCCAGTTTGCCTGGGGTGTTGTTGGTTAGGCCTGACCCGGATTTCAATTCTTTGAGAAAGGACTATAGTTTATCAAGGGACCAGGTAGTTAACCCGTCAGGATTACAAAATATTACCAATATGTTGTTTCCTTCGGGAAATTCTAAGCATTGGCTTGTTAAAATGGATAAACCTGGGGTTGAGGTTGTTACCAAGGCTCAGATTGTCGATTACTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGACGGATGCACAAATGTGTATATATCATGTCTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGACGAGGACTGTGCTCAAGAGCTAGCTGGTTTGCCAGGTGTCTTATCAGTTCAGCCAGATAACAGTTTTGAGTCTGAAAATAAGGATTATGCAGGTAGTACCTTAGAAAATAGTTGGAATATTTCCAACTCTTCTGAAGCAAGTCATGAAGCGCCCTTGAAAACAAAGAAATTGTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGTGAGCTAGTTGAAGTTAAAGTTATTATTGACAAGATTTCAAAAAGATCAAAGGGTTATGCATTTGTTGAATACACCACAGAGGAAGCTGCCAGTGCTGCGCTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTAACCCGCCAAGATACAACAGGAATCGTGCTGAATCATCAAGTTGA 1176 0.4158 MELLSVTGSLCKGQTFSFQKPKTSQIHELPINVRLPDTINHSNLSSSSSSCNCSITRVAATTYPSFNSSTTQNRHWMVVLDTPPQGLNSKSHVIDYYVNILQTVLGSEKDAQMSIYDASWNTHFGFCCDVDEEISSQLASLPGVLLVRPDPDFNSLRKDYSLSRDQVVNPSGLQNITNMLFPSGNSKHWLVKMDKPGVEVVTKAQIVDYYAQILTKVMGNETDAQMCIYHVSWKTNFGFCCELDEDCAQELAGLPGVLSVQPDNSFESENKDYAGSTLENSWNISNSSEASHEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYNRNRAESSS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11563g00003 391 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 180 267 IPR037045 -
Vium11563g00003 391 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 59 154 IPR037045 -
Vium11563g00003 391 SUPERFAMILY RNA-binding domain, RBD 286 386 IPR035979 GO:0003676
Vium11563g00003 391 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 179 368 IPR039206 GO:0016554
Vium11563g00003 391 SMART rrm1_1 300 373 IPR000504 GO:0003723
Vium11563g00003 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 367 IPR000504 GO:0003723
Vium11563g00003 391 FunFam Organelle RRM domain-containing protein 1, chloroplastic 267 391 - -
Vium11563g00003 391 FunFam Organelle RRM domain-containing protein 1, chloroplastic 177 266 - -
Vium11563g00003 391 Gene3D - 269 391 IPR012677 -
Vium11563g00003 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11563g00003 Vium-Chr11563 33 2908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11563g00003 291 386 C2H2 Transcription Factor Family AT2G19380 31.250 1.01e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11563g00003 - - vun:114191397 724.546