Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11558g00001 ATGGTCAATCAGATTAAACAAGAATCTGGAGGAACAGAGGCAGGTATCAGAGGCTCAGAAGATGAGCTGACATGTACTATATGCTTGGACCAAGTTAAGAGGGGGGAGCTTGTTCGTAGCTTACCATGCTTGCATCAGTTTCATGCTAACTGCATTGATCCTTGGCTCCAGCAACAAGGGACATGTCCTGTGTGCAAATTAAGGATAGGGTCGGGAAGTGGGGGAACCAGGGAGAACGAATCCGATGGTTCAGATATTGCGTAA 264 0.4697 MVNQIKQESGGTEAGIRGSEDELTCTICLDQVKRGELVRSLPCLHQFHANCIDPWLQQQGTCPVCKLRIGSGSGGTRENESDGSDIA 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11558g00001 87 SUPERFAMILY RING/U-box 20 70 - -
Vium11558g00001 87 SMART ring_2 25 65 IPR001841 -
Vium11558g00001 87 ProSiteProfiles Zinc finger RING-type profile. 25 66 IPR001841 -
Vium11558g00001 87 Pfam Ring finger domain 24 66 IPR001841 -
Vium11558g00001 87 PANTHER TARGET OF ERK KINASE MPK-1 14 71 - -
Vium11558g00001 87 CDD RING-H2_PA-TM-RING 24 66 - -
Vium11558g00001 87 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 81 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11558g00001 Vium-Chr11558 39 1240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11558g00001 17 87 C3H Transcription Factor Family AT3G55530 64.789 1.79e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11558g00001 K16283 - vum:124820721 185.652