Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11553g00001 ATGAACAATTGCTGTGACAACTCAACTCTTGTTAGCTCTTCATACAAAGCCAACGTGGACACCCTTTTCTCATGGCTACTCACAGACTCTTACGAAAGCGATGGATACAACTACACCTCTGTAAATAGCAACAACCACAACAATGATGATGCTGTTTATGGATTGTACAGTTGCAGATACGACATCACAGGGTATTTTTGCCGGTTCTGCATCAACAGTGCTTCCAGTGAACTCACTCGAAGGTGTTCCAACAGTGTAGGAGCTATCATATGGTATGACATATGCATCATCCGTTACACAAACCAAAGTTTCAGTGGCCAAGTTAGTTTATCTCCAATATGGAATACTACCGGAACCAGAAAAATCAAGGACTCATCAGAAGTTAAGAAAACTGAGGATTGTATGGAGGGTTTGATTAGAAAGGCAACGCTTTTATCAGGAATTTTACCAGATGGAAGACAAATTGCAGTGAAAAGGCTCTCACAATTTTCTGGTCAGGGTTCACAAGAGTTCAAGAATGAAGTGATGTTTATAGCTAAATTGCAACATCGTAACCTTGTGAGACTTTTGGGGTGCTGTTTGGAGGAAAATGAGAAGATACTTGTATATGAGTATATGTTTAATTCAAGCCTCGACTTTTATCTCTTTGGTGGTATGTTTTACGTATAG 669 0.3961 MNNCCDNSTLVSSSYKANVDTLFSWLLTDSYESDGYNYTSVNSNNHNNDDAVYGLYSCRYDITGYFCRFCINSASSELTRRCSNSVGAIIWYDICIIRYTNQSFSGQVSLSPIWNTTGTRKIKDSSEVKKTEDCMEGLIRKATLLSGILPDGRQIAVKRLSQFSGQGSQEFKNEVMFIAKLQHRNLVRLLGCCLEENEKILVYEYMFNSSLDFYLFGGMFYV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11553g00001 222 ProSiteProfiles Protein kinase domain profile. 99 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11553g00001 222 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 145 217 - -
Vium11553g00001 222 FunFam Cysteine-rich receptor-like protein kinase 11 126 205 - -
Vium11553g00001 222 Pfam Salt stress response/antifungal 10 101 IPR002902 -
Vium11553g00001 222 Pfam Protein tyrosine and serine/threonine kinase 150 215 IPR001245 GO:0004672|GO:0006468
Vium11553g00001 222 ProSiteProfiles Gnk2-homologous domain profile. 1 104 IPR002902 -
Vium11553g00001 222 SUPERFAMILY Protein kinase-like (PK-like) 148 219 IPR011009 -
Vium11553g00001 222 Gene3D - 1 104 IPR038408 -
Vium11553g00001 222 Gene3D Phosphorylase Kinase; domain 1 117 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11553g00001 Vium-Chr11553 20571 21690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11553g00001 147 216 Receptor kinase-like Gene Family AT4G23130 70.000 8.64e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium11553g00001 Stress-antifung 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11553g00001 - - vum:124820719 450.669