Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11551g00003 ATGGAGTCAAGGAGCTGCATGAACGTGACGTGCGCCACCTTGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTGCGATCCGGCGAATTCGCCGATCTCTGTGATAAGTGCGGTTCTGCTTATGAGCAATCAGCATATTGTGATACTTTCCATTCCAACGATTCTGGTTGGAGAGAATGCACGTCATGTGACAAGCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGCAAGGAATTCAGGACTTCAACCTATTGCAATCAATGAAAAGCCTAATTTATCGGGGACTTCAAAGGTAATAGATATCAGTGCACAGCAGTGCACTTCTCTGGCTAACCAATTAAACGTGAGGGGTATGCAAGGAGGGAATTATGCAGAAAATGATGGTCTCCGATGCTGGTTCAAACCTCATAAAATTGAAACAGATGTGCCTTCTACAGAAATGAAACCAGAAATTTTGCCTTCTGTTGGAGAACTTGGAAGCACTTTGATATCACAATTTCATTTTGAGTCTAATGGATCATCCAAGGCTTCCAAAGCAGAGAGCTGTAAGGCAGACACAGAAATACGAGATATATATGAATCTTTGGCACAAACTAATTTAAGTATGACCCTTGCTACTCCCATAGGAAATTCAAACCCCTTTCATAGTTCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCTTCACTTTTATTGGGATCAAGGTCTCGCCATCTTTTACCTAAGCCCCCTAGGTCAAGCAGTGGCACAGGCCTAGAAGTAAATGCTGGTATGGTATCCCAGATTCGTGTGGCAAGGCCACCCGCTGAAGGTCGGGGAAGGAATCAGTTGCTTCCGCGTTATTGGCCCAGAATTACTGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCCACTATCGTGCCACTCTTCGAAAAGATGCTGAGTGCAAGTGATGCTGGTCGAATTGGTCGCCTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCAATTTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACGGCAATACAGGAAACACTACCATCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAATGGAACTCTGCTGGTGGTGACATGAACTGGCATAACATTGACATTCCCGAAAGCAGGAAAAGAGAGGGGTTGCCTTTGCCACCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTCGAGCTAAAACTTACTTGGGAAGAGGCTCAGGATTTGCTTCGACCACCTCCTGCTGTTAAACCAAGCATTGTCATGATTGAGGATCAGGTTTTTGAAGAGTATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTCGTAGTTCGATCAGCTGGGGTGAATGAGCAGTGGACGCAGTGTGATAGTTGCTCAAAATGGCGGAAGTTGCCAGTTGATGTACTAATTCCCCCTAAGTGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTCTTCATGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGTTGAATAAAGAATTCAAGAAACAAAGATTGGCAGCAAGCCAGAGACCAGCCCTGGACCATGAATCTTCAGGACTGGATGCTTTGGCAAATGCAGCAATACTTGGAGATGATGCAAGTGATTCTGGCAGGACACCAGTGGTTACCACCACAAAACATCCCCGGCATAGACCTGGGTGTTCTTGCATTGTCTGTATCCAGCCACCAAGTGGAAAGGGAAAACACAAACCTACTTGCACGTGCAATGTGTGCATGACAGTTAAACGACGGTTTAAAACCCTGATGATGAGAAAGAAGAAGCGTCAATCAGAACGTGAAGCTGAGATTGCCCAGAGAAATCAGTTAACATGGCGGACCAAGGACGAATCAGAAGTAGACAGCACCTCACGACATTTAACTCCAGTTGATGGTTTGGAGAATGAAGTAAGGGCGTCAAGTGAGTTGGACCCAAGGACTCAAGACCAAGTTGCTGAAGCTGCCAAGGGACAATTAGATTTGAATTGCCAACCAGATCGAGAAGAAGCGCAAACTGGGCCAAATAATGTGAGCATGACAAGTCTTCTTGAAGAAGCAAATCTGCCGTTGGAGACCTACCTGAAGCAAAATGGCCTTACTAGTTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAACGAGAGTGAGGGAAGACAAAATGAGGATTGCGGTACGGCTTCAGTTATTCATGAGCAGGATAGCAGTCACGAAGATAACAGTGGGCAAGACAAAGACCAAAACAATTCACTCTCATAA 2721 0.4417 MESRSCMNVTCATLTTIRWRKGWALRSGEFADLCDKCGSAYEQSAYCDTFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCISCARNSGLQPIAINEKPNLSGTSKVIDISAQQCTSLANQLNVRGMQGGNYAENDGLRCWFKPHKIETDVPSTEMKPEILPSVGELGSTLISQFHFESNGSSKASKAESCKADTEIRDIYESLAQTNLSMTLATPIGNSNPFHSSVVDEREQSKTSSLLLGSRSRHLLPKPPRSSSGTGLEVNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTAIQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNVLSKKWNSAGGDMNWHNIDIPESRKREGLPLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPAVKPSIVMIEDQVFEEYEEPPVFGKRSIFVVRSAGVNEQWTQCDSCSKWRKLPVDVLIPPKWTCVENLWDQSRSSCAAPNELNPRELDNLLRLNKEFKKQRLAASQRPALDHESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLTWRTKDESEVDSTSRHLTPVDGLENEVRASSELDPRTQDQVAEAAKGQLDLNCQPDREEAQTGPNNVSMTSLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQAQTTNESEGRQNEDCGTASVIHEQDSSHEDNSGQDKDQNNSLS 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11551g00003 906 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Vium11551g00003 906 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Vium11551g00003 906 ProSiteProfiles Zinc finger CW-type profile. 586 636 IPR011124 GO:0008270
Vium11551g00003 906 SMART B3_2 321 421 IPR003340 GO:0003677
Vium11551g00003 906 MobiDBLite consensus disorder prediction 231 268 - -
Vium11551g00003 906 Pfam CW-type Zinc Finger 591 633 IPR011124 GO:0008270
Vium11551g00003 906 CDD B3_DNA 319 420 IPR003340 GO:0003677
Vium11551g00003 906 MobiDBLite consensus disorder prediction 853 906 - -
Vium11551g00003 906 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Vium11551g00003 906 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Vium11551g00003 906 Gene3D - 299 426 IPR015300 -
Vium11551g00003 906 Gene3D - 589 645 - -
Vium11551g00003 906 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 858 - -
Vium11551g00003 906 MobiDBLite consensus disorder prediction 231 250 - -
Vium11551g00003 906 MobiDBLite consensus disorder prediction 853 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11551g00003 Vium-Chr11551 36993 44878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11551g00003 1 857 B3 DNA Binding Superfamily AT4G32010 50.926 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium11551g00003 B3 1.4e-15 CL0405