Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11551g00002 ATGGAGTCAAGGAGCTGCATGAACGTGACGTGCGCCACCTTGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTGCGATCCGGCGAATTCGCCGATCTCTGTGATAAGTGCGGTTCTGCTTATGAGCAATCAGCATATTGTGATACTTTCCATTCCAACGATTCTGGTTGGAGAGAATGCACGTCATGTGACAAGCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGCAAGGAATTCAGGACTTCAACCTATTGCAATCAATGAAAAGCCTAATTTATCGGGGACTTCAAAGGTAATAGATATCAGTGCACAGCAGTGCACTTCTCTGGCTAACCAATTAAACGTGAGGGGTATGCAAGGAGGGAATTATGCAGAAAATGATGGTCTCCGATGCTGGTTCAAACCTCATAAAATTGAAACAGATGTGCCTTCTACAGAAATGAAACCAGAAATTTTGCCTTCTGTTGGAGAACTTGGAAGCACTTTGATATCACAATTTCATTTTGAGTCTAATGGATCATCCAAGGCTTCCAAAGCAGAGAGCTGTAAGGCAGACACAGAAATACGAGATATATATGAATCTTTGGCACAAACTAATTTAAGTATGACCCTTGCTACTCCCATAGGAAATTCAAACCCCTTTCATAGTTCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCTTCACTTTTATTGGGATCAAGGTCTCGCCATCTTTTACCTAAGCCCCCTAGGTCAAGCAGTGGCACAGGCCTAGAAGTAAATGCTGGTATGGTATCCCAGATTCGTGTGGCAAGGCCACCCGCTGAAGGTCGGGGAAGGAATCAGTTGCTTCCGCGTTATTGGCCCAGAATTACTGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCCACTATCGTGCCACTCTTCGAAAAGATGCTGAGTGCAAGTGATGCTGGTCGAATTGGTCGCCTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCAATTTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACGGCAATACAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAATGGAACTCTGCTGGTGGTGACATGAACTGGCATAACATTGACATTCCCGAAAGCAGGAAAAGAGAGGGGTTGCCTTTGCCACCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTCGAGCTAAAACTTACTTGGGAAGAGGCTCAGGATTTGCTTCGACCACCTCCTGCTGTTAAACCAAGCATTGTCATGATTGAGGATCAGGTTTTTGAAGAGTATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTCGTAGTTCGATCAGCTGGGGTGAATGAGCAGTGGACGCAGTGTGATAGTTGCTCAAAATGGCGGAAGTTGCCAGTTGATGTACTAATTCCCCCTAAGTGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTCTTCATGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGTTGAATAAAGAATTCAAGAAACAAAGATTGGCAGCAAGCCAGAGACCAGCCCTGGACCATGAATCTTCAGGACTGGATGCTTTGGCAAATGCAGCAATACTTGGAGATGATGCAAGTGATTCTGGCAGGACACCAGTGGTTACCACCACAAAACATCCCCGGCATAGACCTGGGTGTTCTTGCATTGTCTGTATCCAGCCACCAAGTGGAAAGGGAAAACACAAACCTACTTGCACGTGCAATGTGTGCATGACAGTTAAACGACGGTTTAAAACCCTGATGATGAGAAAGAAGAAGCGTCAATCAGAACGTGAAGCTGAGATTGCCCAGAGAAATCAGTTAACATGGCGGACCAAGGACGAATCAGAAGTAGACAGCACCTCACGACATTTAACTCCAGTTGATGGTTTGGAGAATGAAGTAAGGGCGTCAAGTGAGTTGGACCCAAGGACTCAAGACCAAGTTGCTGAAGCTGCCAAGGGACAATTAGATTTGAATTGCCAACCAGATCGAGAAGAAGCGCAAACTGGGCCAAATAATGTGAGCATGACAAGTCTTCTTGAAGAAGCAAATCTGCCGTTGGAGACCTACCTGAAGCAAAATGGCCTTACTAGTTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAACGAGAGTGAGGGAAGACAAAATGAGGATTGCGGTACGGCTTCAGTTATTCATGAGCAGGATAGCAGTCACGAAGATAACAGTGGGCAAGACAAAGACCAAAACAATTCACTCTCATAA 2613 0.4443 MESRSCMNVTCATLTTIRWRKGWALRSGEFADLCDKCGSAYEQSAYCDTFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCISCARNSGLQPIAINEKPNLSGTSKVIDISAQQCTSLANQLNVRGMQGGNYAENDGLRCWFKPHKIETDVPSTEMKPEILPSVGELGSTLISQFHFESNGSSKASKAESCKADTEIRDIYESLAQTNLSMTLATPIGNSNPFHSSVVDEREQSKTSSLLLGSRSRHLLPKPPRSSSGTGLEVNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTAIQSQKGCSETHLNVLSKKWNSAGGDMNWHNIDIPESRKREGLPLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPAVKPSIVMIEDQVFEEYEEPPVFGKRSIFVVRSAGVNEQWTQCDSCSKWRKLPVDVLIPPKWTCVENLWDQSRSSCAAPNELNPRELDNLLRLNKEFKKQRLAASQRPALDHESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLTWRTKDESEVDSTSRHLTPVDGLENEVRASSELDPRTQDQVAEAAKGQLDLNCQPDREEAQTGPNNVSMTSLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQAQTTNESEGRQNEDCGTASVIHEQDSSHEDNSGQDKDQNNSLS 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11551g00002 870 MobiDBLite consensus disorder prediction 817 870 - -
Vium11551g00002 870 SMART B3_2 321 421 IPR003340 GO:0003677
Vium11551g00002 870 Pfam CW-type Zinc Finger 555 597 IPR011124 GO:0008270
Vium11551g00002 870 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 822 - -
Vium11551g00002 870 ProSiteProfiles Zinc finger CW-type profile. 550 600 IPR011124 GO:0008270
Vium11551g00002 870 MobiDBLite consensus disorder prediction 231 268 - -
Vium11551g00002 870 CDD B3_DNA 319 420 IPR003340 GO:0003677
Vium11551g00002 870 Gene3D - 299 426 IPR015300 -
Vium11551g00002 870 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Vium11551g00002 870 MobiDBLite consensus disorder prediction 817 849 - -
Vium11551g00002 870 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Vium11551g00002 870 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Vium11551g00002 870 Gene3D - 553 609 - -
Vium11551g00002 870 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Vium11551g00002 870 MobiDBLite consensus disorder prediction 231 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11551g00002 Vium-Chr11551 36993 44878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11551g00002 1 821 B3 DNA Binding Superfamily AT4G32010 53.140 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium11551g00002 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11551g00002 K09287 - gmx:100778833 1587.78