Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11551g00001 ATGGGGTGTTTCACTGTTCTGAAATACAAGAAGGAAAAGATCAATAAAATCCGATACACAAAATGTGTGAGCCATATTGAACATGTTCCTACAGTACTTCCTGAACCTCAAATTCATACTCGTTCCCTGCATTCTGCACCTTCTAGTTTTAGGAATAGAGTGAAATCCACTCACCCCATTAATAAAGTTACCAATCCCAGAACACGGACATTATCTGCTCCATCAGCTCTTGATGTGGCCACACAAAATACTCTTACCACAGTCGAGTTCGAGGATCAAGAGGAATCAAGATACAATGTTGGATCACTGAAGGGGCAGCATTCATCTAATCCACTACCTTTACCACTTCCTTCACACCAGGGTGGTGGTGAATTGAAAGCTACTGGAAGCTTTAAGTCAGGAATAGTTAGTGGTTCTGTGTATGGTCCTGATGTTGCAGAACAGGATGCTTTGGCCTCGGTTGAGTATGAGGAACAAGAAGAGTCAAAACACCGAGTTGGATTGGTGAAGGATCATTGTTCAACTAATTCACAACCTTTGCCTCTTCCATCTCGTCAAGGTGGTGGTGCTGCATTGAAGGCTAAGATCAGCACTAAGTTGGGAATGGCTACTGCTCCTGCATATGTCTGCGGACCTTTGCCTCTTCCACCTACCGGGTTGCTTAGAAACTTACCGTTTGAGGAGATTTCTGCTGCTTGTCACAACTTCTCTTCAGATCGATGCATGTCTGAATGTCTTTCTTCTACCATATATAGCGCTTCATTTGGTGATGATGCTTCAAGTGCAAAGAAGTTTGAAGCCACTGTCACTCGCCTTCATTCATCAACACATGGATTGAAGGAATTCATAAATGATGTCAATACCCTTGCATCTTTGCAACATCCAAACCTCTGTAAATTGCTAGGATTTCATGCCCGTGATGGTTCTGAACCAAGGATGTTGGTTTATGAGAGGCTATACCATGGAAGCTTGGACCAACAGTTGTTTGGAAGATCTGATGGCCATTCAATTGATTGGAACTCACGAATGAAAGTTGCCATATGCGCTGCACAAGGTCTTACTTTCTTGCATGAAGAAGGGCCTTTCCAGGCAATGTATAATGAATTTTCGGCAGCCAACATACAGATTGACAAAGATTTCAGTGCAAAACTTTCTGGGTATGGTTGTGTGGGACGAATTCCTGAGGAAGAGATTTCCAGCAGTACATGTGCTGTTGGAAACCTGTCTGTGGAGACACTGGAAAGAGGAATTCTTACTCCAAAGAGCTATGTTTGGGGTTTTGGAATTATTCTTTTGGAGCTACTTACTGGCAGAAAGAATGTGGATAGTCATCACCCCAAGGAAGAGAGGAACTTGGTGAAGTGGAGCCGGCCTTTCCTGGCCGATGATTTTCGACTGTCGTTGATTATGGATCCTCAACTTAAAGGTCGATATCCTCCCAAGGCAGCAAGAGCAGTAGCTGACATTGCACAAAGATGCCTCCAAAAGGAGCCATCAGAAAGACCCCCCATGAGAACCATTGTTGAGCATCTCAAAGTGGTTCAAGATATGAAGTACTCATGTTGGTTCCCACTGCAAGAGCCAGCAAAACAAATGTCAAGATCACCGAGTCTTAATGGTGTCAAATGTCTTACTCCTACACTGAGTTTCTCTCCCTCAACAGCACCAGTTACCAGACCATCTGTTTCATCTCCAAGATGGTGTGCTGTGCCCACACTGCATCTTCCTCTTGGCGCTTGTTCCTCCACTTTCTCCATGGACGACCATGTTAGGCCGGAAAGCCGGAAGTCAATCCTCAATGTGTAG 1806 0.4435 MGCFTVLKYKKEKINKIRYTKCVSHIEHVPTVLPEPQIHTRSLHSAPSSFRNRVKSTHPINKVTNPRTRTLSAPSALDVATQNTLTTVEFEDQEESRYNVGSLKGQHSSNPLPLPLPSHQGGGELKATGSFKSGIVSGSVYGPDVAEQDALASVEYEEQEESKHRVGLVKDHCSTNSQPLPLPSRQGGGAALKAKISTKLGMATAPAYVCGPLPLPPTGLLRNLPFEEISAACHNFSSDRCMSECLSSTIYSASFGDDASSAKKFEATVTRLHSSTHGLKEFINDVNTLASLQHPNLCKLLGFHARDGSEPRMLVYERLYHGSLDQQLFGRSDGHSIDWNSRMKVAICAAQGLTFLHEEGPFQAMYNEFSAANIQIDKDFSAKLSGYGCVGRIPEEEISSSTCAVGNLSVETLERGILTPKSYVWGFGIILLELLTGRKNVDSHHPKEERNLVKWSRPFLADDFRLSLIMDPQLKGRYPPKAARAVADIAQRCLQKEPSERPPMRTIVEHLKVVQDMKYSCWFPLQEPAKQMSRSPSLNGVKCLTPTLSFSPSTAPVTRPSVSSPRWCAVPTLHLPLGACSSTFSMDDHVRPESRKSILNV 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11551g00001 601 Gene3D Phosphorylase Kinase; domain 1 218 317 - -
Vium11551g00001 601 SUPERFAMILY Protein kinase-like (PK-like) 219 522 IPR011009 -
Vium11551g00001 601 ProSiteProfiles Protein kinase domain profile. 236 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11551g00001 601 MobiDBLite consensus disorder prediction 90 112 - -
Vium11551g00001 601 Pfam Protein tyrosine and serine/threonine kinase 259 511 IPR001245 GO:0004672|GO:0006468
Vium11551g00001 601 PANTHER OS01G0588500 PROTEIN-RELATED 167 515 - -
Vium11551g00001 601 Gene3D Transferase(Phosphotransferase) domain 1 319 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11551g00001 Vium-Chr11551 5952 10059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11551g00001 211 515 Receptor kinase-like Gene Family AT4G02010 36.334 3.62e-51 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Vium11551g00001 PK_Tyr_Ser-Thr 9.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11551g00001 - - aprc:113849641 881.322