Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1154g00005 ATGGGTTGTTGTGTCTCAACAAGCAGTAGAAGTACTTGTAGCAGCAAGAGCAATGGAGACACGGTCTCTCCATCTTGTTTAGAAATTGGATTCTGTGGGCAGAAGAGAACAAGACGAACATTCTCTGATCATGTTATTTCTCTTCACCATTTACCATCCTTACCTAGCAGAATTTTCTCTAATGGAAAGAGCCGGGGTTCGTGCATCTTTACGCAGCAGGGCCGCAAGGGTATTAATCAGGATGCCATGATTGTGTGGGAAGATTTCATGTCTGAAGATAAGATCTTTTGTGGTGTTTTTGATGGGCATGGTCCGCACGGTCATCTTGTTGCACGCAAAGTTAGGGATGCTCTACCTCTTAAACTGCTATCATTTTTGCATTCTTCTGAATCAAAGCGAAATGGGTCTGGGAAAACTTGCTTCAAAGGGAATGTAAAATCTGATAGTGTAGAATTTGAGAAGGATTGCTCCACAGAGGATAAAATGAACTCTATGTGGAGAGAAGCTTTCATGAAGGCATACAAGGCCATGGATAAGGAGCTCAGGTCCCATCCAAATTTGGATTGCTTCTGCAGTGAGAGCACTGCTGTGACTATAGTGAAGCAGGGTTCCAATCTGTTCATGGGCTATATTGGGGATTCTCGGGCAATCATGGGATCAAAGGATAGCAATGATTCAATGGTGGCTATTCAGTTGACTGTGGATTTGAAGCCTGATTTGCCAAGGGAAGCAGAAAGAATTAAGCGCTGCAAAGGTAGGGTATTTGCTTTGCAAGATGAGCCTGAAGTGCCTAGGGTGTGGTTGCCCTTTGATGATGCACCAGGATTAGCAATGGCCAGAGCCTTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCTATCCCCGAGTTTTCCCATCGGCAGCTTACTGACAGAGATCAATTCATTGTTCTTGCATCAGACGGGGTGTGGGATGTTTTAAGCAATGAGGAGGTGGTTGAAATAGTATCTTCAGCACCAACACGATCATCAGCAGCAAGGATTCTGGTAGATTCTGCTGCCAGGGAGTGGAAACTGAAGTACCCTACTTCAAAGATGGATGACTGTGCTGTAGTATGCTTATTTTTGGATGGGAAAATGGACTCAGAATCTGATTATGATGAACAAGGCTTTTCTTCTGCAACCATACAGAGCAACCATTCAGGTAACCCCATTGAGTCAGATGATGGACAAAAGTCTGAGCCATCATTGCAGAGGAACTTCACTGTGAGATCCTCAGAAGAAAATGAGACTAATGGAGCACTAACTGTTGATGTCGAAGATGGAACATCATCAGCTGATGATCAAAACTGGTCAGGTTTGGAAGGGGTCACTCGTGTAAACTCACTTGTCCAACTTCCTAGATTTTCTGAGGAAAGGCCAAACTCTTGA 1413 0.4402 MGCCVSTSSRSTCSSKSNGDTVSPSCLEIGFCGQKRTRRTFSDHVISLHHLPSLPSRIFSNGKSRGSCIFTQQGRKGINQDAMIVWEDFMSEDKIFCGVFDGHGPHGHLVARKVRDALPLKLLSFLHSSESKRNGSGKTCFKGNVKSDSVEFEKDCSTEDKMNSMWREAFMKAYKAMDKELRSHPNLDCFCSESTAVTIVKQGSNLFMGYIGDSRAIMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRQLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDYDEQGFSSATIQSNHSGNPIESDDGQKSEPSLQRNFTVRSSEENETNGALTVDVEDGTSSADDQNWSGLEGVTRVNSLVQLPRFSEERPNS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1154g00005 470 MobiDBLite consensus disorder prediction 1 21 - -
Vium1154g00005 470 CDD PP2Cc 65 370 IPR001932 -
Vium1154g00005 470 FunFam probable protein phosphatase 2C 52 57 373 - -
Vium1154g00005 470 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
Vium1154g00005 470 Gene3D - 58 378 IPR036457 -
Vium1154g00005 470 MobiDBLite consensus disorder prediction 380 447 - -
Vium1154g00005 470 Pfam Protein phosphatase 2C 92 347 IPR001932 -
Vium1154g00005 470 SUPERFAMILY PP2C-like 57 372 IPR036457 -
Vium1154g00005 470 PANTHER PROTEIN PHOSPHATASE 65 368 IPR015655 GO:0004722|GO:0006470
Vium1154g00005 470 SMART PP2C_4 50 368 IPR001932 -
Vium1154g00005 470 MobiDBLite consensus disorder prediction 381 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1154g00005 Vium-Chr1154 133676 138522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1154g00005 1 470 PP2C-type Phosphatase Gene Family AT1G03590 70.502 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1154g00005 - - gmx:100813306 894.804