Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11545g00002 ACTTATATTTTATTTTATAAATCATGGGTCAGGTTAGAACACATTCTTGTTGAAGAAATTATAGATGATATTTTGAAAAAACTGAATCGTTATTCCGTCAGTTATAATCAAGGAATCATCGGTATTGAAAAACATATTGAAGAAATTCGATCCTTGTTGGATCTTGAGTCACCGGATATTCGGATCATAGGAATTTGTGGCATGGGAGGAATGGGAAAAACTACAATTTCTGAACAATTATATCACACATTGGCAGTGCAGTTTGATTCCCACAGCCTTGTTTTAGATGTTCAAGAAAAACTACAAAGAGAGGGAATACACAATATCATAGCAAAATATTGGTCTGAGCTTCTAAAGGAAACATCATCCTCTCATTTATCATATTACAATGAACGGATGAAACGGACAAAGGTCCTCCTCATTCTTGATGATGTGACCGATTCAACTCTACTTAAGAAATTAATGGAAGGATGTGATCGCTTTGGGCTGGGTAGTAGAATCATTATGACCAGTAGAGACAGACAAGTGCTTAAGAATGCTGGAACTGATGATATCTACGAACTTAAGGAGTTGAATTTTTATGATTCTCTAAAACTTTTTAATTTACATGCTTTTAAACAAAATTCTTCAAAAGAAATTACTTACATGGACTTGTCAATAAAGGTGTTGAGATATGCAAAAGGGGTTCCGTTAGCTCTCCAAATTTTGGGTTCATTGTTATATGACAGACAAAGAGAAGCATGGGAAAGTCAGTTGCAAAACTTGGAGAAGTGCCAAGATCATGATATTTTCAATGTATTAAAATTAAGTTATGATGGACTCCGTGAGGCGGAGAAAAATATATTTCTTGACATCGCTTGCTTTTATAGAGGACACAACGAGATTGTAGTAGCAGAAACACTAAATGACTGTGGTTTCTCTTCTAAGATTGGAATGGATGTTCTCAAAGATAAATGTCTCATATCTATCTTGGATGGTAGAATTGTGATGCACGATCTAATACAAGAAATGGGTCAAGAAATTGTTCGTAAAGAGTGTCCTCAACATCCTGGAAAACGCAGCCGATTGTTCAAGGCTGACGAAATTCATGAGATTTTAAAAAAAAACAAGATGCAATACAATGTATATTACAAGATATAG 1140 0.3465 TYILFYKSWVRLEHILVEEIIDDILKKLNRYSVSYNQGIIGIEKHIEEIRSLLDLESPDIRIIGICGMGGMGKTTISEQLYHTLAVQFDSHSLVLDVQEKLQREGIHNIIAKYWSELLKETSSSHLSYYNERMKRTKVLLILDDVTDSTLLKKLMEGCDRFGLGSRIIMTSRDRQVLKNAGTDDIYELKELNFYDSLKLFNLHAFKQNSSKEITYMDLSIKVLRYAKGVPLALQILGSLLYDRQREAWESQLQNLEKCQDHDIFNVLKLSYDGLREAEKNIFLDIACFYRGHNEIVVAETLNDCGFSSKIGMDVLKDKCLISILDGRIVMHDLIQEMGQEIVRKECPQHPGKRSRLFKADEIHEILKKNKMQYNVYYKI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11545g00002 379 Gene3D - 21 185 IPR027417 -
Vium11545g00002 379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 285 IPR027417 -
Vium11545g00002 379 Pfam NB-ARC domain 43 261 IPR002182 GO:0043531
Vium11545g00002 379 PRINTS Disease resistance protein signature 226 240 - -
Vium11545g00002 379 PRINTS Disease resistance protein signature 62 77 - -
Vium11545g00002 379 PRINTS Disease resistance protein signature 132 146 - -
Vium11545g00002 379 SUPERFAMILY "Winged helix" DNA-binding domain 262 367 IPR036390 -
Vium11545g00002 379 Gene3D - 191 275 IPR042197 -
Vium11545g00002 379 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 366 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11545g00002 Vium-Chr11545 3720 5004 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11545g00002 40 374 WRKY Transcription Factor Family AT5G45050 34.897 5.42e-61 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11545g00002 - - vum:124820712 736.487