Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1152g00003 ATGGAGACCATTGGTTCTGTGGATGACCTCTTGGATTTTTCGTTGGACATAGGCGAGGAAGATGATGACGAAGACAAACACAGGAAATCCTGTCCTTCACTTAACTCAAAATGTGGCAACCCATCATTGTTTAACTCATTGGTACCAGATGATCCGAACCATTCATATTCTGAGTTTGTCGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCTTCTGTTGAAACATTTGTTGACCTATCATGTATTCAACCTGATACAGCCAAGATCAAAAAATCAACCCCAGTAACAAGCCCAGTACTTGAGGACAGCACAGGCAGTAGCAACAGTAATAACAGCAGTAACAGTATTTCTCTCCTAAACAGTTGTGATCACCTTAAGGTCCCAGTTCGTGCACGAAGCAAGAGACGCAGTAGGTGTCGCCCTGGCATTGCTGATGAAAACTCTGGTCAGCAAGTCTGGTGGAGACAACCAAGTAATGAAATTTCCAAGGCAGAAGAAGGGATGAAAATCTCACCAATTGGGAGGCAATGTCAGCACTGTGGAGCTGAAAAAACTCCACAGTGGCGGGCAGGTCCCCTTGGGCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGTCGGCTTGTGCCTGAATACCGTCCTGCCAGTAGCCCAACTTTTCGTAGTGATTTGCATTCTAATTCCCATAGGAAGATAGTAGAGATGAGGAGGCAGAAGCAAATGGGAATGGGGTAA 753 0.4502 METIGSVDDLLDFSLDIGEEDDDEDKHRKSCPSLNSKCGNPSLFNSLVPDDPNHSYSEFVEEELEWLSNKDAFPSVETFVDLSCIQPDTAKIKKSTPVTSPVLEDSTGSSNSNNSSNSISLLNSCDHLKVPVRARSKRRSRCRPGIADENSGQQVWWRQPSNEISKAEEGMKISPIGRQCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFRSDLHSNSHRKIVEMRRQKQMGMG 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1152g00003 250 Pfam GATA zinc finger 180 213 IPR000679 GO:0006355|GO:0043565
Vium1152g00003 250 PANTHER GATA TRANSCRIPTION FACTOR 6 246 - -
Vium1152g00003 250 ProSitePatterns GATA-type zinc finger domain. 180 205 IPR000679 GO:0006355|GO:0043565
Vium1152g00003 250 ProSiteProfiles GATA-type zinc finger domain profile. 174 210 IPR000679 GO:0006355|GO:0043565
Vium1152g00003 250 Gene3D - 174 227 IPR013088 GO:0006355|GO:0008270
Vium1152g00003 250 MobiDBLite consensus disorder prediction 93 117 - -
Vium1152g00003 250 FunFam GATA transcription factor 169 249 - -
Vium1152g00003 250 CDD ZnF_GATA 179 227 IPR000679 GO:0006355|GO:0043565
Vium1152g00003 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 176 237 - -
Vium1152g00003 250 MobiDBLite consensus disorder prediction 136 159 - -
Vium1152g00003 250 SMART GATA_3 174 224 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1152g00003 Vium-Chr1152 24765 32826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1152g00003 61 250 C2C2-Gata Transcription Factor Family AT3G24050 48.131 8.38e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium1152g00003 GATA 8.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1152g00003 - - gmx:100784527 400.208