Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11521g00010 ATGACACTTGCAGGTCAAGGAAACATGCAAGGTTTGATCCTGCAGGTTTATATGAAGCCATTAAGCCTTCAAAAGCCAATGATTGAAGATGACATACCAGAGTTACTTCCTAAACTGAGGCCATATCAAAGGCGTGCAGCTTTTTGGATGGTAGAAAGAGAGAAAGCAGTGGAAGAAAGTCAGGGTGAAAGAGAAAGAAATCAGTTTCATTCTCCACTATGCATACCTGTGGATTTTCTGGACACCAGTTCTCAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTACCCAGAGACTTCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTACTCACCGTAGATCAGCATCTGGAAGTGACATATTTTTTGATTTAGAGCCACAAATTAACACTGACCAAAAGGTCACTTTGAAGAGAGTTAAAAGAGATCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTGTGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCGGATTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACAGTGGCTGTGAGGGATGGAGAATATGTATGTCATATGTGCTCTGAACTAATTCAAGCTACTGAATCTCCTATTGCCTCTGGCGCCACTCTCATTGTCTGCCCTGCTCCTATTCTGCCCCAGTGGCATGATGAAATTATACGCCATACACATCAAGGCTCCTTGAAAACTTGTGTCTACGAAGGTGTGCGAGAAACATCTTTTTCCAATGCGTCTGTGATGGATATCAGTGATCTTGCTAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAGGATATGTCTCACGATTCTGATAGGCATGAAGGTGATCGACACTTTCTGAGGTTTCAAAAAAGGTACCCTGTCATCCCAACTCTTCTTACGAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAAAGTAGTACTACAGCTTCCACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGATGGTGTATTACTGGTACCCCAATTCAGCGAAAACTTGATGACTTATATGGACTTCTAAGGTTCCTTGTAGCTAGTCCTTTTGATACATACAGGTGGTGGACTGATGTTATTAGAGATCCTTATGAGAAGGGAGATGTGGGAGCTATGGAATTTACACACAAAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAGCAACATGTTGCTGATGAATTGTACCTTCCGTCCCAAGAGGAGTGTCTCTCTTGGCTTACACTCTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCTCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGGCCAAGATTCTATCTCTTTGCAAAGCTCCTCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGTTCCCTACAGCAGACACCAATGACTATGGAAGAAATACTAATGGTTCTTATAAGCAAGACCAAAATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTTTGAATGCACTTGCAGCTATTGCTGCAATACAAAATGATTTTTGTCAAGCTACATCACTGTACGGTGAAGCTCTTGCTTTGGCTGGAGAGCATGCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATACATCATAATCTTGCTGAAATACTTCCACTTGCTTCAAACTTTTCTTTAACATTGGCATCCAAAGGCAAACAATTATCTGAAAGTTCTGAATTTAAGATGACCAAAAGGCATTTAATTTTAAAGGTTGACAGTTGTCATGTGAAGAGGCAAAGAATAAGTGGTTGTGATGACATAAATGCAACTGTGCCGTCTTCAGAACCATCAAATGTTAGCCTTTTGGAAAATGACGCAAAGGAGGATCAGGAATTTGATAATTTATCAGCCAGTTCTGTCGAATCTCTGATAGCAGAATGTGAAGATTCAAAACAGAAATTCTTGTCTGTCTTCAGTTCAAAGCTATCTATAGCCCAGCAGGAGTTTCAAAGTTCTTACATTCAGGTCAGTAATGCTTATCAAGACAGTCGAACACATCAAAATTCATTTTGGTGGTTAGAAGCACTCCATCATGTTGAGCAGAGCAAAGAGTTCTCCTCTGAGTTGATTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAGCAATTCAAAGTCATCAAGAATAACTGCTCGTTTCCGAAGCATAAGCGCTCTAAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACACTACTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAGGAAGATATTGAACGTGTGGGTAAATGTCGAAATTGTCAGCCTAATTCTGACGGTCCCCCATGTGTTTTGTGCGAGCTAGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTCGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCACTAAATCATTTCCTCTCAAAGCTATCACAATCTAGTAACAGTTCTACAACATCTGATATTGGTCATGAAGAATCAAAGAAAAGGAATGTTGGACAAAGAGTAGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTAATTCTTGGAGTTATAAAGAACTACTGCAAGGCTCGATTAGGAAAGGACTCTGTCTCAGCTGCCACCAAAGATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATAAAGATGGCTGTTTCCCGTCTGCACCTAAGGACAAGTGAAGATGATAAATCTCTCGATGCTTTAGGTGAAAATGAATTAGTTGCTGCTAGCTCCAACTTTTCCCACGAAAAGTTTATGTCATTGACCATGTTGTCCCAGACGAAAGGAAAACTCCGCTACCTAAAGGGTTTAGTTCAATCCAAGCAAAAAAAGCAATTTGAAAGTCCAAACGGCTCTTCAATCTCAGTAGAAAGAACTGCAATGTCAAACTATACTGAAGAGAAGGCTGTACTTATAGCTAAAACTGATGATGAAACATGCCCAGTCTGCCAAGAAAAGCTAGGCAATCAGAAGATGGTTTTTCAATGTGGGCATGTCACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGCTTCATAATTGGGTGATGTGCCCTACATGTCGGCAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGACTCACAGAATGAATCTTCCAATCTTTCAGTGCTGCATACAATTAACAGCAGTGAAAAATGTGAAGCATCCATTAGTGTCAAAGGATCATATGGGACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATTCCTTTACTGCCAATAACATTACCTTCATCCGGATGAAGGGGGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAACAGAATGATACAAAAGGATGTGAGGGGTCAACACCAGAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGTGCCAATGGACTCAATCTTTTGGAAGCACAGCATGTGGTTCTTGTAGAGCCATTGCTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTTCATCGGATTGGACAAAAAAATAAGACCCTCATTCATCGTTTTATTGTCAAAGACACAGTTGAAGAGAGTCTATATAAATTGAACAGAAGCAGGAGCAATCATTCATTTATCAGTGGAAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGCTGTCTAGAGCACCTCTTACAATGCCAGAAAGTGAAGAAAATCCTAGCACAAACACAAATCTAAGACACTTGCCACCATCAGTAGCCGCTGCTATAGCTGCTGAGAAGAGACTTAATGAACAAAGGACATGA 4260 0.4023 MTLAGQGNMQGLILQVYMKPLSLQKPMIEDDIPELLPKLRPYQRRAAFWMVEREKAVEESQGERERNQFHSPLCIPVDFLDTSSQMFFNPFSGNISLYPETSSPYVFGGILADEMGLGKTVELLACIFTHRRSASGSDIFFDLEPQINTDQKVTLKRVKRDRVECICGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCESKTYKTTVAVRDGEYVCHMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTHQGSLKTCVYEGVRETSFSNASVMDISDLASADIVLTTYDVLKEDMSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESSTTASTEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLVASPFDTYRWWTDVIRDPYEKGDVGAMEFTHKVFKQIMWRSSKQHVADELYLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKGQDSISLQSSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQNDFCQATSLYGEALALAGEHAEDFRLDPLLNIHIHHNLAEILPLASNFSLTLASKGKQLSESSEFKMTKRHLILKVDSCHVKRQRISGCDDINATVPSSEPSNVSLLENDAKEDQEFDNLSASSVESLIAECEDSKQKFLSVFSSKLSIAQQEFQSSYIQVSNAYQDSRTHQNSFWWLEALHHVEQSKEFSSELIRKIEEAISGTSSNSKSSRITARFRSISALKYQIQTGLDQLEASRKTLLDRLLEIDQTMEKPKEEDIERVGKCRNCQPNSDGPPCVLCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSSNSSTTSDIGHEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGKDSVSAATKDLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRTSEDDKSLDALGENELVAASSNFSHEKFMSLTMLSQTKGKLRYLKGLVQSKQKKQFESPNGSSISVERTAMSNYTEEKAVLIAKTDDETCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQNSKLHNWVMCPTCRQHTDFGNIAYAVDSQNESSNLSVLHTINSSEKCEASISVKGSYGTKIEAVTRRILWVKANDHKAKVLVFSSWNDVLDVLEHSFTANNITFIRMKGGRKAHVAISQFRGKQNDTKGCEGSTPESIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESLYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESEENPSTNTNLRHLPPSVAAAIAAEKRLNEQRT 1419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11521g00010 1419 Coils Coil 817 837 - -
Vium11521g00010 1419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 435 IPR027417 -
Vium11521g00010 1419 SUPERFAMILY FYVE/PHD zinc finger 161 233 IPR011011 -
Vium11521g00010 1419 ProSiteProfiles Zinc finger RING-type profile. 1106 1154 IPR001841 -
Vium11521g00010 1419 SMART PHD_3 164 232 IPR001965 -
Vium11521g00010 1419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 1375 IPR027417 -
Vium11521g00010 1419 Pfam Zinc finger, C3HC4 type (RING finger) 1106 1153 IPR018957 GO:0046872
Vium11521g00010 1419 CDD SF2_C_SNF 1197 1334 - -
Vium11521g00010 1419 Gene3D - 95 149 IPR038718 -
Vium11521g00010 1419 ProSitePatterns Zinc finger PHD-type signature. 165 231 IPR019786 -
Vium11521g00010 1419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 230 IPR013083 -
Vium11521g00010 1419 Pfam Helicase conserved C-terminal domain 1201 1323 IPR001650 -
Vium11521g00010 1419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1092 1177 IPR013083 -
Vium11521g00010 1419 CDD DEXQc_SHPRH 39 438 - -
Vium11521g00010 1419 Pfam SNF2-related domain 42 534 IPR000330 GO:0005524|GO:0140658
Vium11521g00010 1419 CDD PHD_TCF19_like 166 210 - -
Vium11521g00010 1419 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1203 1374 IPR001650 -
Vium11521g00010 1419 SMART ring_2 1106 1153 IPR001841 -
Vium11521g00010 1419 SUPERFAMILY RING/U-box 1099 1158 - -
Vium11521g00010 1419 Gene3D - 1178 1396 IPR027417 -
Vium11521g00010 1419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 24 1418 - -
Vium11521g00010 1419 Gene3D - 231 458 IPR038718 -
Vium11521g00010 1419 SMART helicmild6 1231 1323 IPR001650 -
Vium11521g00010 1419 SMART ultradead3 35 408 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11521g00010 Vium-Chr11521 34453 59351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11521g00010 239 532 RAD5 or RAD16-like Gene Family AT5G22750 32.107 5.31e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium11521g00010 SNF2_N 2.9e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11521g00010 K15710 - gmx:100776659 2465.26