Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11521g00009 ATGGGTAGGCGAAAAAGTAAACCACATCGAGCAGGTGGGATAATACTAGACCCAGATGCTTCTGCCGAGACAGAATTGAATAAACAAAATGCTGTAGAAGGAGGGGAAGAAGCAAAAGGTAGTTCTGGTGGCATTGATAAGCCTTATTTTGTGGAGGTTGCTCGGTTGGATTGGTTGTCGGGTGAACACCTTGATATTTCTGAGGTTGTTTTGAGGGATTTAAAATTGAGTGAAGGTTTTTCTGGTTTTGAGTTGGCTGAGGATTTTTGTCGGGATCAGCAGTACTTGTTAAGATTTCGAGTATGTAATGTAAGTAATGTTCTTGGTCGAATTAAATTAGGTCATTGGCCTGTGTTACCCTATACTGATATTCATCTGGAGTTTGCAAGAAGAGTTACCGTTGATCATGAGGAAACTTATACAGTGTTGTTATCTGGTGTTTTTGACGGACCTGATGAAGGTGTTACTGGGCTTCTTCACTTGGCAAGTTTGAAGTTTGTTACACTGAGGCCAGTTCCTGGGGTTGGGCTTTCTGAGGAAATTTCCTCCCTCAGGGTAAGGGTTGAGGTACTAAAGAACGGCTTCAATGCATGTGAGTCGCTTCTTGATACTTCTAGACAACTATGGAAAAAGAGTATGGTAAATGTAATGTCTTGGTTGCGTCCAGAAATAATGACTTCAGAAGTTAGGTATGGGTTCTATAGCTGTATGAAAATGGATGGTGATCCACAGACAGAGATGGTAGATGACACTTGCAGGTCAAGGAAACATGCAAGGTTTGATCCTGCAGGTTTATATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGATTGAAGATGACATACCAGAGTTACTTCCTAAACTGAGGCCATATCAAAGGCGTGCAGCTTTTTGGATGGTAGAAAGAGAGAAAGCAGTGGAAGAAAGTCAGGGTGAAAGAGAAAGAAATCAGTTTCATTCTCCACTATGCATACCTGTGGATTTTCTGGACACCAGTTCTCAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTACCCAGAGACTTCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTACTCACCGTAGATCAGCATCTGGAAGTGACATATTTTTTGATTTAGAGCCACAAATTAACACTGACCAAAAGGTCACTTTGAAGAGAGTTAAAAGAGATCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTGTGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCGGATTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACAGTGGCTGTGAGGGATGGAGAATATGTATGTCATATGTGCTCTGAACTAATTCAAGCTACTGAATCTCCTATTGCCTCTGGCGCCACTCTCATTGTCTGCCCTGCTCCTATTCTGCCCCAGTGGCATGATGAAATTATACGCCATACACATCAAGGCTCCTTGAAAACTTGTGTCTACGAAGGTGTGCGAGAAACATCTTTTTCCAATGCGTCTGTGATGGATATCAGTGATCTTGCTAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAGGATATGTCTCACGATTCTGATAGGCATGAAGGTGATCGACACTTTCTGAGGTTTCAAAAAAGGTACCCTGTCATCCCAACTCTTCTTACGAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAAAGTAGTACTACAGCTTCCACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGATGGTGTATTACTGGTACCCCAATTCAGCGAAAACTTGATGACTTATATGGACTTCTAAGGTTCCTTGTAGCTAGTCCTTTTGATACATACAGGTGGTGGACTGATGTTATTAGAGATCCTTATGAGAAGGGAGATGTGGGAGCTATGGAATTTACACACAAAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAGCAACATGTTGCTGATGAATTGTACCTTCCGTCCCAAGAGGAGTGTCTCTCTTGGCTTACACTCTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCTCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGGCCAAGATTCTATCTCTTTGCAAAGCTCCTCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGTTCCCTACAGCAGACACCAATGACTATGGAAGAAATACTAATGGTTCTTATAAGCAAGACCAAAATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTTTGAATGCACTTGCAGCTATTGCTGCAATACAAAATGATTTTTGTCAAGCTACATCACTGTACGGTGAAGCTCTTGCTTTGGCTGGAGAGCATGCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATACATCATAATCTTGCTGAAATACTTCCACTTGCTTCAAACTTTTCTTTAACATTGGCATCCAAAGGCAAACAATTATCTGAAAGTTCTGAATTTAAGATGACCAAAAGGCATTTAATTTTAAAGGTTGACAGTTGTCATGTGAAGAGGCAAAGAATAAGTGGTTGTGATGACATAAATGCAACTGTGCCGTCTTCAGAACCATCAAATGTTAGCCTTTTGGAAAATGACGCAAAGGAGGATCAGGAATTTGATAATTTATCAGCCAGTTCTGTCGAATCTCTGATAGCAGAATGTGAAGATTCAAAACAGAAATTCTTGTCTGTCTTCAGTTCAAAGCTATCTATAGCCCAGCAGGAGTTTCAAAGTTCTTACATTCAGGTCAGTAATGCTTATCAAGACAGTCGAACACATCAAAATTCATTTTGGTGGTTAGAAGCACTCCATCATGTTGAGCAGAGCAAAGAGTTCTCCTCTGAGTTGATTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAGCAATTCAAAGTCATCAAGAATAACTGCTCGTTTCCGAAGCATAAGCGCTCTAAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACACTACTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAGGAAGATATTGAACGTGTGGGTAAATGTCGAAATTGTCAGCCTAATTCTGACGGTCCCCCATGTGTTTTGTGCGAGCTAGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTCGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCACTAAATCATTTCCTCTCAAAGCTATCACAATCTAGTAACAGTTCTACAACATCTGATATTGGTCATGAAGAATCAAAGAAAAGGAATGTTGGACAAAGAGTAGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTAATTCTTGGAGTTATAAAGAACTACTGCAAGGCTCGATTAGGAAAGGACTCTGTCTCAGCTGCCACCAAAGATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATAAAGATGGCTGTTTCCCGTCTGCACCTAAGGACAAGTGAAGATGATAAATCTCTCGATGCTTTAGGTGAAAATGAATTAGTTGCTGCTAGCTCCAACTTTTCCCACGAAAAGTTTATGTCATTGACCATGTTGTCCCAGACGAAAGGAAAACTCCGCTACCTAAAGGGTTTAGTTCAATCCAAGCAAAAAAAGCAATTTGAAAGTCCAAACGGCTCTTCAATCTCAGTAGAAAGAACTGCAATGTCAAACTATACTGAAGAGAAGGCTGTACTTATAGCTAAAACTGATGATGAAACATGCCCAGTCTGCCAAGAAAAGCTAGGCAATCAGAAGATGGTTTTTCAATGTGGGCATGTCACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGCTTCATAATTGGGTGATGTGCCCTACATGTCGGCAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGACTCACAGAATGAATCTTCCAATCTTTCAGTGCTGCATACAATTAACAGCAGTGAAAAATGTGAAGCATCCATTAGTGTCAAAGGATCATATGGGACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATTCCTTTACTGCCAATAACATTACCTTCATCCGGATGAAGGGGGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAACAGAATGATACAAAAGGATGTGAGGGGTCAACACCAGAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGTGCCAATGGACTCAATCTTTTGGAAGCACAGCATGTGGTTCTTGTAGAGCCATTGCTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTTCATCGGATTGGACAAAAAAATAAGACCCTCATTCATCGTTTTATTGTCAAAGACACAGTTGAAGAGAGTCTATATAAATTGAACAGAAGCAGGAGCAATCATTCATTTATCAGTGGAAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGCTGTCTAGAGCACCTCTTACAATGCCAGAAAGTGAAGAAAATCCTAGCACAAACACAAATCTAAGACACTTGCCACCATCAGTAGCCGCTGCTATAGCTGCTGAGAAGAGACTTAATGAACAAAGGACATGA 5010 0.4046 MGRRKSKPHRAGGIILDPDASAETELNKQNAVEGGEEAKGSSGGIDKPYFVEVARLDWLSGEHLDISEVVLRDLKLSEGFSGFELAEDFCRDQQYLLRFRVCNVSNVLGRIKLGHWPVLPYTDIHLEFARRVTVDHEETYTVLLSGVFDGPDEGVTGLLHLASLKFVTLRPVPGVGLSEEISSLRVRVEVLKNGFNACESLLDTSRQLWKKSMVNVMSWLRPEIMTSEVRYGFYSCMKMDGDPQTEMVDDTCRSRKHARFDPAGLYEAIKPSKAEPMIEDDIPELLPKLRPYQRRAAFWMVEREKAVEESQGERERNQFHSPLCIPVDFLDTSSQMFFNPFSGNISLYPETSSPYVFGGILADEMGLGKTVELLACIFTHRRSASGSDIFFDLEPQINTDQKVTLKRVKRDRVECICGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCESKTYKTTVAVRDGEYVCHMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTHQGSLKTCVYEGVRETSFSNASVMDISDLASADIVLTTYDVLKEDMSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESSTTASTEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLVASPFDTYRWWTDVIRDPYEKGDVGAMEFTHKVFKQIMWRSSKQHVADELYLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKGQDSISLQSSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQNDFCQATSLYGEALALAGEHAEDFRLDPLLNIHIHHNLAEILPLASNFSLTLASKGKQLSESSEFKMTKRHLILKVDSCHVKRQRISGCDDINATVPSSEPSNVSLLENDAKEDQEFDNLSASSVESLIAECEDSKQKFLSVFSSKLSIAQQEFQSSYIQVSNAYQDSRTHQNSFWWLEALHHVEQSKEFSSELIRKIEEAISGTSSNSKSSRITARFRSISALKYQIQTGLDQLEASRKTLLDRLLEIDQTMEKPKEEDIERVGKCRNCQPNSDGPPCVLCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSSNSSTTSDIGHEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGKDSVSAATKDLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRTSEDDKSLDALGENELVAASSNFSHEKFMSLTMLSQTKGKLRYLKGLVQSKQKKQFESPNGSSISVERTAMSNYTEEKAVLIAKTDDETCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQNSKLHNWVMCPTCRQHTDFGNIAYAVDSQNESSNLSVLHTINSSEKCEASISVKGSYGTKIEAVTRRILWVKANDHKAKVLVFSSWNDVLDVLEHSFTANNITFIRMKGGRKAHVAISQFRGKQNDTKGCEGSTPESIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESLYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESEENPSTNTNLRHLPPSVAAAIAAEKRLNEQRT 1669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11521g00009 1669 SMART ring_2 1356 1403 IPR001841 -
Vium11521g00009 1669 CDD SF2_C_SNF 1447 1584 - -
Vium11521g00009 1669 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1453 1624 IPR001650 -
Vium11521g00009 1669 Gene3D - 1428 1646 IPR027417 -
Vium11521g00009 1669 Gene3D - 481 708 IPR038718 -
Vium11521g00009 1669 CDD DEXQc_SHPRH 289 688 - -
Vium11521g00009 1669 SUPERFAMILY RING/U-box 1349 1408 - -
Vium11521g00009 1669 Coils Coil 1067 1087 - -
Vium11521g00009 1669 SMART helicmild6 1481 1573 IPR001650 -
Vium11521g00009 1669 SMART ultradead3 285 658 IPR014001 -
Vium11521g00009 1669 Pfam Helicase conserved C-terminal domain 1451 1573 IPR001650 -
Vium11521g00009 1669 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Vium11521g00009 1669 SMART PHD_3 414 482 IPR001965 -
Vium11521g00009 1669 CDD PHD_TCF19_like 416 460 - -
Vium11521g00009 1669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1624 IPR027417 -
Vium11521g00009 1669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1342 1427 IPR013083 -
Vium11521g00009 1669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 480 IPR013083 -
Vium11521g00009 1669 Gene3D - 345 399 IPR038718 -
Vium11521g00009 1669 MobiDBLite consensus disorder prediction 1 43 - -
Vium11521g00009 1669 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 47 1668 - -
Vium11521g00009 1669 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Vium11521g00009 1669 ProSiteProfiles Zinc finger RING-type profile. 1356 1404 IPR001841 -
Vium11521g00009 1669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 685 IPR027417 -
Vium11521g00009 1669 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11521g00009 Vium-Chr11521 34453 60739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11521g00009 489 782 RAD5 or RAD16-like Gene Family AT5G22750 32.107 7.12e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium11521g00009 SNF2_N 4e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11521g00009 K15710 - gmx:100776659 2920.57