Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium11521g00005 | ATGCCTACTGTATCACCTATTGAAAGAGTTGGAAAATATGTTGGCCCAGAAGATTGGAATGCTTTGATCAATGATCCAGATACAGTGGTTATTGATGTGCGGAATAACTATGAAACCAGAATCGGAAAGTTTAAAGGAGCAGTTGATCCATGTACTACATCATTTCGTGAATTCCCGTCTTGGGTAGAGGAGCGTTTCCAGCTTAGCGAAACAGACGATGGTAAGAATCCAAAAGTTGAGGTAAACAATTCAGTCCAACCTGCTGAAAAAGAAATGGAGAATCAAAAACAACATATGCCACGCGTTGCAATGTATTGCACTGGAGGTATTCGTTGTGAGAAAGCTACAAGTCTACTTCTCAGCAAAGGTTTCAAAGAGGTTTATCACCTGGAAGGTGGAATTTTAAAATATCTTGAAGAGGTTCCAGAAACAGAAAGCCTCTGGGAAGGGGAATGCTTTGTTTTCGACAAACGAGTCTCTGTGGAGCATGGCTTGGTGCCAGGAAATTTCAAACTCTGCTATGGCTGTAAACAGCCTGTGAGTGATGCTGACATGGAGGCCCCAGAATTTGAATATGGAGTTTCCTGTCCTCACTGTTTTGCACTGAAATCTGATGAAGAGAAGGAGAGAGCTCGAGCTCGACAAAGACAATTTGAGAGATGGGGAATCATAGGTGGTCCAGACAAGGGCCGCCGCCCAACTACTCAAGAACCGGAAAGTCTTAGCAGGAATCCAAACCAGCTTTCACGTTCTATTTAA | 759 | 0.4321 | MPTVSPIERVGKYVGPEDWNALINDPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVEERFQLSETDDGKNPKVEVNNSVQPAEKEMENQKQHMPRVAMYCTGGIRCEKATSLLLSKGFKEVYHLEGGILKYLEEVPETESLWEGECFVFDKRVSVEHGLVPGNFKLCYGCKQPVSDADMEAPEFEYGVSCPHCFALKSDEEKERARARQRQFERWGIIGGPDKGRRPTTQEPESLSRNPNQLSRSI | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium11521g00005 | 252 | SMART | rhod_4 | 14 | 143 | IPR001763 | - | |
| Vium11521g00005 | 252 | CDD | RHOD_YceA | 11 | 139 | - | - | |
| Vium11521g00005 | 252 | Gene3D | - | 1 | 179 | IPR036873 | - | |
| Vium11521g00005 | 252 | ProSiteProfiles | Rhodanese domain profile. | 24 | 146 | IPR001763 | - | |
| Vium11521g00005 | 252 | Pfam | Rhodanese-like domain | 17 | 139 | IPR001763 | - | |
| Vium11521g00005 | 252 | SUPERFAMILY | Rhodanese/Cell cycle control phosphatase | 2 | 172 | IPR036873 | - | |
| Vium11521g00005 | 252 | MobiDBLite | consensus disorder prediction | 237 | 252 | - | - | |
| Vium11521g00005 | 252 | PANTHER | THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 | 7 | 226 | IPR020936 | - | |
| Vium11521g00005 | 252 | MobiDBLite | consensus disorder prediction | 211 | 252 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium11521g00005 | Vium-Chr11521 | 28408 | 32751 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium11521g00005 | 1 | 252 | Sulfurtransferasese or Rhodanese | AT2G40760 | 70.866 | 1.11e-129 | 374 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium11521g00005 | - | - | gmx:100784854 | 470.314 |