Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11521g00004 ATGGAAGCATATCCAAACGCGGCTTCCATGCTGAGAAGCAGAACCATAATACCTCCTCTTCCACCATTACTCGCCCTCAGTGCAAGGCTTCCATCACCGTCACAGTCACCGTTACTGTCACCCTCCGTTACCCCCTCGGAAGCCACACTATCGTGTTCTGGAACCCCGAAACCCTCGTTCCACAGTTTTTCTCTCTTCTCCAATTCTCACACTCTTCAAACCATGACGCTCTCCAAGTGCTTCTCTCACATTGGGCCCACCGTCCCCATTCCGGACCCACCCGGATCCGAACCCGAACCCGATTCCCCTCTCGTGGTGGTTTCCTTCTACAAATTTGCGGATTTTCCCGATCATGCTCTCATGCGAAGCCCCTTGAAGCAACTCTGTCAACGCCTGCGTGTTTCAGGTGGAATTATTCTTGCGCCTGAAGGGATCAATGGCAGCATCTGTGGAACTCGGGAGTCAGTTGAGGCTGTTCTGGCATTTGTCCAAGGTGATGATCGATTGAAGGGACTAAGGCGAGTGGAATCACCTGTTGGTCCTGAGGAGGAGGCCATCCATCATGGTCATAGTGCTGCTTCTCCTCTTGCTGCTGGGGAAGATGCGCCCTTCCGATGGGATCATGTGAGGGTCAAGTTGAAGAAAGAGATTGTTACTCTTGGGATGCCTACTGTATCACCTATTGAAAGAGTTGGAAAATATGTTGGCCCAGAAGATTGGAATGCTTTGATCAATGATCCAGATACAGTGGTTATTGATGTGCGGAATAACTATGAAACCAGAATCGGAAAGTTTAAAGGAGCAGTTGATCCATGTACTACATCATTTCGTGAATTCCCGTCTTGGGTAGAGGAGCGTTTCCAGCTTAGCGAAACAGACGATGGTAAGAATCCAAAAGTTGAGGTAAACAATTCAGTCCAACCTGCTGAAAAAGAAATGGAGAATCAAAAACAACATATGCCACGCGTTGCAATGTATTGCACTGGAGGTATTCGTTGTGAGAAAGCTACAAGTCTACTTCTCAGCAAAGGTTTCAAAGAGGTTTATCACCTGGAAGGTGGAATTTTAAAATATCTTGAAGAGGTTCCAGAAACAGAAAGCCTCTGGGAAGGGGAATGCTTTGTTTTCGACAAACGAGTCTCTGTGGAGCATGGCTTGGTGCCAGGAAATTTCAAACTCTGCTATGGCTGTAAACAGCCTGTGAGTGATGCTGACATGGAGGCCCCAGAATTTGAATATGGAGTTTCCTGTCCTCACTGTTTTGCACTGAAATCTGATGAAGAGAAGGAGAGAGCTCGAGCTCGACAAAGACAATTTGAGAGATGGGGAATCATAGGTGGTCCAGACAAGGGCCGCCGCCCAACTACTCAAGAACCGGAAAGTCTTAGCAGGAATCCAAACCAGCTTTCACGTTCTATTTAA 1422 0.4761 MEAYPNAASMLRSRTIIPPLPPLLALSARLPSPSQSPLLSPSVTPSEATLSCSGTPKPSFHSFSLFSNSHTLQTMTLSKCFSHIGPTVPIPDPPGSEPEPDSPLVVVSFYKFADFPDHALMRSPLKQLCQRLRVSGGIILAPEGINGSICGTRESVEAVLAFVQGDDRLKGLRRVESPVGPEEEAIHHGHSAASPLAAGEDAPFRWDHVRVKLKKEIVTLGMPTVSPIERVGKYVGPEDWNALINDPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVEERFQLSETDDGKNPKVEVNNSVQPAEKEMENQKQHMPRVAMYCTGGIRCEKATSLLLSKGFKEVYHLEGGILKYLEEVPETESLWEGECFVFDKRVSVEHGLVPGNFKLCYGCKQPVSDADMEAPEFEYGVSCPHCFALKSDEEKERARARQRQFERWGIIGGPDKGRRPTTQEPESLSRNPNQLSRSI 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11521g00004 473 SMART rhod_4 235 364 IPR001763 -
Vium11521g00004 473 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 214 393 IPR036873 -
Vium11521g00004 473 Hamap tRNA uridine(34) hydroxylase [trhO]. 102 404 IPR020936 -
Vium11521g00004 473 Gene3D - 219 400 IPR036873 -
Vium11521g00004 473 CDD RHOD_YceA 232 360 - -
Vium11521g00004 473 Gene3D - 96 218 - -
Vium11521g00004 473 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 99 436 IPR020936 -
Vium11521g00004 473 ProSiteProfiles Rhodanese domain profile. 245 367 IPR001763 -
Vium11521g00004 473 MobiDBLite consensus disorder prediction 458 473 - -
Vium11521g00004 473 Pfam UPF0176 acylphosphatase like domain 105 217 IPR040503 -
Vium11521g00004 473 Pfam Rhodanese-like domain 238 360 IPR001763 -
Vium11521g00004 473 MobiDBLite consensus disorder prediction 432 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11521g00004 Vium-Chr11521 28102 32751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11521g00004 104 473 Sulfurtransferasese or Rhodanese AT2G40760 75.000 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11521g00004 - - gmx:100784854 744.577