Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11521g00003 ATGGAAGCATATCCAAACGCGGCTTCCATGCTGAGAAGCAGAACCATAATACCTCCTCTTCCACCATTACTCGCCCTCAGTGCAAGGCTTCCATCACCGTCACAGTCACCGTTACTGTCACCCTCCGTTACCCCCTCGGAAGCCACACTATCGTGTTCTGGAACCCCGAAACCCTCGTTCCACAGTTTTTCTCTCTTCTCCAATTCTCACACTCTTCAAACCATGACGCTCTCCAAGTGCTTCTCTCACATTGGGCCCACCGTCCCCATTCCGGACCCACCCGGATCCGAACCCGAACCCGATTCCCCTCTCGTGGTGGTTTCCTTCTACAAATTTGCGGATTTTCCCGATCATGCTCTCATGCGAAGCCCCTTGAAGCAACTCTGTCAACGCCTGCGTGTTTCAGGTGGAATTATTCTTGCGCCTGAAGGGATCAATGGCAGCATCTGTGGAACTCGGGAGTCAGTTGAGGCTGTTCTGGCATTTGTCCAAGGTGATGATCGATTGAAGGGACTAAGGCGAGTGGAATCACCTGTTGGTCCTGAGGAGGAGGCCATCCATCATGGTCATAGTGCTGCTTCTCCTCTTGCTGCTGGGGAAGATGCGCCCTTCCGATGGGATCATGTGAGGGTCAAGTTGAAGAAAGAGATTGTTACTCTTGGGATGCCTACTGTATCACCTATTGAAAGAGTTGGAAAATATGTTGGCCCAGAAGATTGGAATGCTTTGATCAATGATCCAGATACAGTGGTTATTGATGTGCGGAATAACTATGAAACCAGAATCGGAAAGTTTAAAGGAGCAGTTGATCCATGTACTACATCATTTCGTGAATTCCCGTCTTGGGTAGAGGAGCGTTTCCAGCTTAGCGAAACAGACGATGGTAAGAATCCAAAAGTTGAGGTAAACAATTCAGTCCAACCTGCTGAAAAAGAAATGGAGAATCAAAAACAACATATGCCACGCGTTGCAATGTATTGCACTGGAGGTATTCGTTGTGAGAAAGCTACAAGTCTACTTCTCAGCAAAGGTTTCAAAGAGAAACAGAAAGCCTCTGGGAAGGGGAATGCTTTGTTTTCGACAAACGAGTCTCTGTGGAGCATGGCTTGGTGCCAGGAAATTTCAAACTCTGCTATGGCTGTAAACAGCCTGTGA 1155 0.4814 MEAYPNAASMLRSRTIIPPLPPLLALSARLPSPSQSPLLSPSVTPSEATLSCSGTPKPSFHSFSLFSNSHTLQTMTLSKCFSHIGPTVPIPDPPGSEPEPDSPLVVVSFYKFADFPDHALMRSPLKQLCQRLRVSGGIILAPEGINGSICGTRESVEAVLAFVQGDDRLKGLRRVESPVGPEEEAIHHGHSAASPLAAGEDAPFRWDHVRVKLKKEIVTLGMPTVSPIERVGKYVGPEDWNALINDPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVEERFQLSETDDGKNPKVEVNNSVQPAEKEMENQKQHMPRVAMYCTGGIRCEKATSLLLSKGFKEKQKASGKGNALFSTNESLWSMAWCQEISNSAMAVNSL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11521g00003 384 Gene3D - 219 367 IPR036873 -
Vium11521g00003 384 Gene3D - 96 218 - -
Vium11521g00003 384 CDD RHOD_YceA 232 347 - -
Vium11521g00003 384 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 99 347 IPR020936 -
Vium11521g00003 384 SMART rhod_4 235 376 IPR001763 -
Vium11521g00003 384 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 214 346 IPR036873 -
Vium11521g00003 384 ProSiteProfiles Rhodanese domain profile. 245 348 IPR001763 -
Vium11521g00003 384 Pfam UPF0176 acylphosphatase like domain 105 217 IPR040503 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11521g00003 Vium-Chr11521 28096 32428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11521g00003 104 366 Sulfurtransferasese or Rhodanese AT2G40760 70.412 9.91e-132 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11521g00003 - - gmx:100784854 511.916