Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11519g00001 ATGGTGATCGAGCATGACATTGAGAGCTGCGGGAGCAGAGCGGTGCAGTTGTCGCACGCTAACCACCCTCGACACCACCGCCAGAAACTGGAGGTGTACAATGAGGTGTTGCGGCGGATTCAGGATTCCGATTGCGAGGAGGCGCACGTTCCCGGCTTCGATGATCAGCTTTGGCTTCACTTCAATCGCCTTCCTGCTAGGTACGCGTTGGATGTAAATGTTGAGAGGGCAGAAGATGTTCTGGCTCATAAAAGATTGCTCAAGTTGGCGGAGGATCCCGCATCTCGACCTGCATTTCAAGTTCGGTTAGTACAGGTATATCCTTTTGGTGGTGCAAATTATTCTGATTCCATACATTCAGATCCTTCTGAAATAGAGGATGCTCAGAGTTCTCTTAACTATTCTTTAAAGCAGGGAATTCATCCACCACCCCACATTGGTTCATCATCTAATCTAGAAGCCTCCTTGCAACTTTCAAACAACCAAAATAACATTGAAGAGGGGGAAAAACTAATCTTTTACTTACTAAATTTTAGGCCCATGCACGAGATTACCTTTTCAACAGTTGACAAGCCTAAACTCCTTAGTCAGTTAACATCAATACTTGGTGAGATGGGACTGAATATTCAAGAAGCTCATGCATTTTCCACCACTGATGGATTTTCTCTGGATGTCTTTGTTGTTGAGGGATGGCCCAATGAGGAAACTGAGGAGCTGAAAGGTGTGTTAGAAAAGGAAATTTACAAGGTTAAGGAGCAGAATATGTCAAATCAGGGCATACATTGTGCTGCCAATGATCATTACCAGACAAGGATAGAGCAATCCCCTCATTGCATTCAAATACCAACTGACGGAGCTGATGTCTGGGAACTTGATACCAACCAGCTGAAATATGAAAACAAAGTTGGCTCTGGGTCATTTGGTGACTTGTACAGAGGTACATATTGCAGTCAAGATGTTGCTATCAAAGTTCTGAAGCCTGAGCGTATAAGTACAGATATGCTGAAGGAGTTTGCACAAGAAGTTTATATCATGAGGAAGATTCGACATAAGAATGTTGTTCAGTTCATCGGCGCATGTACCAGGCCCCCAAATCTTTGTATTGTTACGGAGTTTATGTCTAGGGGAAGCTTATATGACTTTCTGCACAAACAAAGAGGTGTATTTAAGCTTCCATCTTTGCTAAAAGTAGCAATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGGGACCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAAGTGGTAAAGGTTGCTGATTTTGGGGTTGCTAGAGTGCAAACTCAGTCTGGTGTGATGACAGCTGAAACTGGAACATACCGTTGGATGGCTCCTGAGGTATAA 1389 0.432 MVIEHDIESCGSRAVQLSHANHPRHHRQKLEVYNEVLRRIQDSDCEEAHVPGFDDQLWLHFNRLPARYALDVNVERAEDVLAHKRLLKLAEDPASRPAFQVRLVQVYPFGGANYSDSIHSDPSEIEDAQSSLNYSLKQGIHPPPHIGSSSNLEASLQLSNNQNNIEEGEKLIFYLLNFRPMHEITFSTVDKPKLLSQLTSILGEMGLNIQEAHAFSTTDGFSLDVFVVEGWPNEETEELKGVLEKEIYKVKEQNMSNQGIHCAANDHYQTRIEQSPHCIQIPTDGADVWELDTNQLKYENKVGSGSFGDLYRGTYCSQDVAIKVLKPERISTDMLKEFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENEVVKVADFGVARVQTQSGVMTAETGTYRWMAPEV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11519g00001 462 Gene3D Transferase(Phosphotransferase) domain 1 375 462 - -
Vium11519g00001 462 ProSitePatterns Protein kinases ATP-binding region signature. 302 323 IPR017441 GO:0005524
Vium11519g00001 462 CDD STKc_MAP3K-like 302 462 - -
Vium11519g00001 462 PRINTS Tyrosine kinase catalytic domain signature 453 462 IPR001245 GO:0004672|GO:0006468
Vium11519g00001 462 PRINTS Tyrosine kinase catalytic domain signature 407 425 IPR001245 GO:0004672|GO:0006468
Vium11519g00001 462 PRINTS Tyrosine kinase catalytic domain signature 370 383 IPR001245 GO:0004672|GO:0006468
Vium11519g00001 462 ProSiteProfiles Protein kinase domain profile. 296 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11519g00001 462 SUPERFAMILY Protein kinase-like (PK-like) 275 462 IPR011009 -
Vium11519g00001 462 SUPERFAMILY ACT-like 181 249 IPR045865 -
Vium11519g00001 462 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 203 462 - -
Vium11519g00001 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Vium11519g00001 462 Pfam Protein tyrosine and serine/threonine kinase 296 462 IPR001245 GO:0004672|GO:0006468
Vium11519g00001 462 Gene3D Phosphorylase Kinase; domain 1 286 374 - -
Vium11519g00001 462 CDD ACT_TyrKc 181 247 - -
Vium11519g00001 462 SMART serkin_6 296 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11519g00001 462 FunFam Serine/threonine-protein kinase isoform 1 286 374 - -
Vium11519g00001 462 ProSiteProfiles ACT domain profile. 183 258 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11519g00001 Vium-Chr11519 2756 10629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11519g00001 8 462 MAP Kinase Kinase Kinase AT4G35780 70.022 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium11519g00001 PK_Tyr_Ser-Thr 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11519g00001 - - vum:124820684 937.562