Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11516g00004 ATGATGGTGCTGGCGAATTCTGGTTCGGGCCTTCGGAGACAGGTTTTTCCCGTGGACTACGAAACGGAGCTTTCGCAGCGTCTCGTAGAAGCGGCTTATTATGGCGACACCGACTCTGCTTTTGACTTTGTCGACAATCCCTCTGTCGACGTTAACTTCGTCGGAACGGTGTCGTTTAAGTTCAAAACGACGGAGATCGTGCTGCAGGACGAGTCGCCTCACCGAGTTAACTCGGTGTACGAGGAGTTCAAGACCGAGCTCACCGCTCTGTTCCTGGCCGCGCACACAGGGAATTTGACACTTCTTCGGAAGCTTCTGAATGTTGGAGCTAATGTAAATATGAGAATGTTCCGGGGCTATGCCACAACAGCGTCAGTGAGAGAAGGGCATCTAAAAGTGTTGGAGGTCCTCATCAATGCTGGGGCATCACAACTTGCATGCGAGGAGGCTCTAATGGAAGCAAGCTATTTGGGCAGGGCCAGATTTGTTGAATTACTCATGCAATCCAACATGATTCGTCCTCAGGTTGCAGTTCATGCCCTTGTCTCTGCCTGTTGCAGAGGCTTCGTTGAGGTTGTTGATGTACTCATCAAGCATGGAGTGGATGCCAATGCAATTGATAGGACTTTGCTTCAATCTTCAAAGCCATTTCTTCATGCTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGGCAGATTGATGTTGTTAGATTACTGTTGCAGGTTGGAGTAAGGCTTGACATGAAGGTCAAACTGGGGGCTTGGTCCTGGGACACAGATACAGGAGAAGAATTTCGTGTAGGTGTTGGACTAGCTGAGGCCTATCCAATCACCTGGTGTGCCGTTGAGTATTTTGAGTCCACTGGTGCTATATTGCATATGCTGCTCTGCCATCTCTCACCTAATAGCTTACACATTGGGAGGAGTCTCTTGCACCATGCTATCACCTGTAACAACGAAAGAGCTGTAAATATTCTTCTAAACAATGGTGCTGATACAGAAGTGACTGTGCAAACCACTGAAGAAACCAATGAACGGCCTATTCACATTGCTGCACGGGTTGGATCATGCAACATTCTTCAGTGCCTGATCAATAGTGGTTGTAACTTGGATTCCCAGACAAAATGTGGAGATACAGCACTGATGATCTGCACAAGGCACAAACATGAGAAGTGCCTTGGGGTCCTAGCATCAGCAGGTGCTGATTTGGGAATGGTAAATTCATCTGATCAATGTGCAACTTCAATTGCAAACTTTGTTCAGTGGACTAAAGTCTACCAGAAAGTGATATTGGATGTAATCAGAGCAGGGAAGGTTGTTAAATCAAGCAATGCCGCTAGATTCTTCGCATTGTTATTTGTAACTCGTGCAAATGACATGGAGGGTATGAAGAAACTCATTGAAAATGGGAACATCAATCTGAATGAGCAAAATGCAAATGGATTTTCTGCTGCTATGATAGCTGCTGTAGTGGGTAACGTGGAGGCTTTGAAGTTGCTTCTTTATGCAGGAGCTGACGTGACTAGGCTTAAAAACAAATATGGTTTGACAGCACTTAACCTCGTTGATGTGAGCCAAAACAGTGAAGCGTTCCACAAGGTGATGCTTGAATATGCACTTAAAGGAGGAGGCGATGGTTCAATTGAGGCAAACCCTCTCCACCGTGCAGCTTGCTACGGAGACATAAGCATTGTTCACAAACTACTAAAAGAGGGTTATGAAGTAAATGCTTTTGATGGTGAAGGATTTACCCCTTTGATGTTAGCAGCAAGAGGGTGCCGTGGTGAAATGTGTGAGCTTTTGATCTCATATGGAGCTGAATGTGATATTCAGAATGAGAGACATGAGACAGCCCTTTCACTTTCCATAGAAAATGGTGCAGGAAATGATGCTGAACGTGTGATTTTGGATGAGCTAGCTAGAAAACTGGTCTTGGGTGGACATCGTGTGAAGAAGCATACAAAGTGTGGCAAAGGTTCACCTCATGGTAAGTTACTACAGATGATTGGTGCTGCTGGAATCTTACGTTGGGGAAAATCAAGTAAGAGAAATGTGATTTGTAAAGAGGCTGAGGTTGGGCCTAGTGTGAAATTTCGATGGAATCGTAGGAGGAAGTTTGATGTCGAGGAACCAGGATTGTTCCATGTTGTTACTACAAAAGATAAAGAGGTACATTTTGTGTGTGAAGGAGGGGTTGAAATGGCTGATTTGTGGGTAAGGGGGATTCAATTAGTAACTAGAGAAGCCATTTCTGGTAGAAGAGCTCCTGAGGTTTGA 2286 0.451 MMVLANSGSGLRRQVFPVDYETELSQRLVEAAYYGDTDSAFDFVDNPSVDVNFVGTVSFKFKTTEIVLQDESPHRVNSVYEEFKTELTALFLAAHTGNLTLLRKLLNVGANVNMRMFRGYATTASVREGHLKVLEVLINAGASQLACEEALMEASYLGRARFVELLMQSNMIRPQVAVHALVSACCRGFVEVVDVLIKHGVDANAIDRTLLQSSKPFLHANVDCNALFAAVVSRQIDVVRLLLQVGVRLDMKVKLGAWSWDTDTGEEFRVGVGLAEAYPITWCAVEYFESTGAILHMLLCHLSPNSLHIGRSLLHHAITCNNERAVNILLNNGADTEVTVQTTEETNERPIHIAARVGSCNILQCLINSGCNLDSQTKCGDTALMICTRHKHEKCLGVLASAGADLGMVNSSDQCATSIANFVQWTKVYQKVILDVIRAGKVVKSSNAARFFALLFVTRANDMEGMKKLIENGNINLNEQNANGFSAAMIAAVVGNVEALKLLLYAGADVTRLKNKYGLTALNLVDVSQNSEAFHKVMLEYALKGGGDGSIEANPLHRAACYGDISIVHKLLKEGYEVNAFDGEGFTPLMLAARGCRGEMCELLISYGAECDIQNERHETALSLSIENGAGNDAERVILDELARKLVLGGHRVKKHTKCGKGSPHGKLLQMIGAAGILRWGKSSKRNVICKEAEVGPSVKFRWNRRRKFDVEEPGLFHVVTTKDKEVHFVCEGGVEMADLWVRGIQLVTREAISGRRAPEV 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11516g00004 761 Gene3D - 431 539 IPR036770 -
Vium11516g00004 761 ProSiteProfiles Ankyrin repeat region circular profile. 346 374 - -
Vium11516g00004 761 ProSiteProfiles Ankyrin repeat region circular profile. 309 338 - -
Vium11516g00004 761 Gene3D - 13 177 IPR036770 -
Vium11516g00004 761 ProSiteProfiles Ankyrin repeat region circular profile. 483 510 - -
Vium11516g00004 761 PANTHER ANKYRIN REPEAT-CONTAINING 22 746 - -
Vium11516g00004 761 Pfam Ankyrin repeats (3 copies) 556 635 IPR002110 GO:0005515
Vium11516g00004 761 Pfam Ankyrin repeats (3 copies) 347 408 IPR002110 GO:0005515
Vium11516g00004 761 SUPERFAMILY Ankyrin repeat 87 608 IPR036770 -
Vium11516g00004 761 Gene3D - 540 664 IPR036770 -
Vium11516g00004 761 ProSiteProfiles Ankyrin repeat profile. 346 378 IPR002110 GO:0005515
Vium11516g00004 761 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Vium11516g00004 761 ProSiteProfiles Ankyrin repeat profile. 551 583 IPR002110 GO:0005515
Vium11516g00004 761 ProSiteProfiles Ankyrin repeat profile. 483 515 IPR002110 GO:0005515
Vium11516g00004 761 ProSiteProfiles Ankyrin repeat profile. 309 341 IPR002110 GO:0005515
Vium11516g00004 761 ProSiteProfiles Ankyrin repeat region circular profile. 551 582 - -
Vium11516g00004 761 ProSiteProfiles Ankyrin repeat region circular profile. 85 115 - -
Vium11516g00004 761 SUPERFAMILY Ankyrin repeat 28 255 IPR036770 -
Vium11516g00004 761 Gene3D - 305 430 IPR036770 -
Vium11516g00004 761 ProSiteProfiles Ankyrin repeat region circular profile. 584 616 - -
Vium11516g00004 761 SMART ANK_2a 346 375 IPR002110 GO:0005515
Vium11516g00004 761 SMART ANK_2a 222 251 IPR002110 GO:0005515
Vium11516g00004 761 SMART ANK_2a 551 580 IPR002110 GO:0005515
Vium11516g00004 761 SMART ANK_2a 117 146 IPR002110 GO:0005515
Vium11516g00004 761 SMART ANK_2a 584 613 IPR002110 GO:0005515
Vium11516g00004 761 SMART ANK_2a 176 205 IPR002110 GO:0005515
Vium11516g00004 761 SMART ANK_2a 309 338 IPR002110 GO:0005515
Vium11516g00004 761 SMART ANK_2a 483 512 IPR002110 GO:0005515
Vium11516g00004 761 SMART ANK_2a 85 114 IPR002110 GO:0005515
Vium11516g00004 761 SMART ANK_2a 379 408 IPR002110 GO:0005515
Vium11516g00004 761 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Vium11516g00004 761 Gene3D - 178 262 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11516g00004 Vium-Chr11516 11529 16803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11516g00004 334 532 Ion Channels AT2G25600 25.871 5.97e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11516g00004 - - gmx:100795638 1340.48