Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11516g00003 ATGATGGTGCTGGCGAATTCTGGTTCGGGCCTTCGGAGACAGGTTTTTCCCGTGGACTACGAAACGGAGCTTTCGCAGCGTCTCGTAGAAGCGGCTTATTATGGCGACACCGACTCTGCTTTTGACTTTGTCGACAATCCCTCTGTCGACGTTAACTTCGTCGGAACGGTGTCGTTTAAGTTCAAAACGACGGAGATCGTGCTGCAGGACGAGTCGCCTCACCGAGTTAACTCGGTGTACGAGGAGTTCAAGACCGAGCTCACCGCTCTGTTCCTGGCCGCGCACACAGGGAATTTGACACTTCTTCGGAAGCTTCTGAATGTTGGAGCTAATGTAAATATGAGAATGTTCCGGGGCTATGCCACAACAGCGTCAGTGAGAGAAGGGCATCTAAAAGTGTTGGAGGTCCTCATCAATGCTGGGGCATCACAACTTGCATGCGAGGAGGCTCTAATGGAAGCAAGCTATTTGGGCAGGGCCAGATTTGTTGAATTACTCATGCAATCCAACATGATTCGTCCTCAGGTTGCAGTTCATGCCCTTGTCTCTGCCTGTTGCAGAGGCTTCGTTGAGGTTGTTGATGTACTCATCAAGGTTGGAGTAAGGCTTGACATGAAGGTCAAACTGGGGGCTTGGTCCTGGGACACAGATACAGGAGAAGAATTTCGTGTAGGTGTTGGACTAGCTGAGGCCTATCCAATCACCTGGTGTGCCGTTGAGTATTTTGAGTCCACTGGTGCTATATTGCATATGCTGCTCTGCCATCTCTCACCTAATAGCTTACACATTGGGAGGAGTCTCTTGCACCATGCTATCACCTGTAACAACGAAAGAGCTGTAAATATTCTTCTAAACAATGGTGCTGATACAGAAGTGACTGTGCAAACCACTGAAGAAACCAATGAACGGCCTATTCACATTGCTGCACGGGTTGGATCATGCAACATTCTTCAGTGCCTGATCAATAGTGGTTGTAACTTGGATTCCCAGACAAAATGTGGAGATACAGCACTGATGATCTGCACAAGGCACAAACATGAGAAGTGCCTTGGGGTCCTAGCATCAGCAGGTGCTGATTTGGGAATGGTAAATTCATCTGATCAATGTGCAACTTCAATTGCAAACTTTGTTCAGTGGACTAAAGTCTACCAGAAAGTGATATTGGATGTAATCAGAGCAGGGAAGGTTGTTAAATCAAGCAATGCCGCTAGATTCTTCGCATTGTTATTTGTAACTCGTGCAAATGACATGGAGGGTATGAAGAAACTCATTGAAAATGGGAACATCAATCTGAATGAGCAAAATGCAAATGGATTTTCTGCTGCTATGATAGCTGCTGTAGTGGGTAACGTGGAGGCTTTGAAGTTGCTTCTTTATGCAGGAGCTGACGTGACTAGGCTTAAAAACAAATATGGTTTGACAGCACTTAACCTCGTTGATGTGAGCCAAAACAGTGAAGCGTTCCACAAGGTGATGCTTGAATATGCACTTAAAGGAGGAGGCGATGGTTCAATTGAGGCAAACCCTCTCCACCGTGCAGCTTGCTACGGAGACATAAGCATTGTTCACAAACTACTAAAAGAGGGTTATGAAGTAAATGCTTTTGATGGTGAAGGATTTACCCCTTTGATGTTAGCAGCAAGAGGGTGCCGTGGTGAAATGTGTGAGCTTTTGATCTCATATGGAGCTGAATGTGATATTCAGAATGAGAGACATGAGACAGCCCTTTCACTTTCCATAGAAAATGGTGCAGGAAATGATGCTGAACGTGTGATTTTGGATGAGCTAGCTAGAAAACTGGTCTTGGGTGGACATCGTGTGAAGAAGCATACAAAGTGTGGCAAAGGTTCACCTCATGGTAAGTTACTACAGATGATTGGTGCTGCTGGAATCTTACGTTGGGGAAAATCAAGTAAGAGAAATGTGATTTGTAAAGAGGCTGAGGTTGGGCCTAGTGTGAAATTTCGATGGAATCGTAGGAGGAAGTTTGATGTCGAGGAACCAGGATTGTTCCATGTTGTTACTACAAAAGATAAAGAGGTACATTTTGTGTGTGAAGGAGGGGTTGAAATGGCTGATTTGTGGGTAAGGGGGATTCAATTAGTAACTAGAGAAGCCATTTCTGGTAGAAGAGCTCCTGAGGTTTGA 2148 0.4539 MMVLANSGSGLRRQVFPVDYETELSQRLVEAAYYGDTDSAFDFVDNPSVDVNFVGTVSFKFKTTEIVLQDESPHRVNSVYEEFKTELTALFLAAHTGNLTLLRKLLNVGANVNMRMFRGYATTASVREGHLKVLEVLINAGASQLACEEALMEASYLGRARFVELLMQSNMIRPQVAVHALVSACCRGFVEVVDVLIKVGVRLDMKVKLGAWSWDTDTGEEFRVGVGLAEAYPITWCAVEYFESTGAILHMLLCHLSPNSLHIGRSLLHHAITCNNERAVNILLNNGADTEVTVQTTEETNERPIHIAARVGSCNILQCLINSGCNLDSQTKCGDTALMICTRHKHEKCLGVLASAGADLGMVNSSDQCATSIANFVQWTKVYQKVILDVIRAGKVVKSSNAARFFALLFVTRANDMEGMKKLIENGNINLNEQNANGFSAAMIAAVVGNVEALKLLLYAGADVTRLKNKYGLTALNLVDVSQNSEAFHKVMLEYALKGGGDGSIEANPLHRAACYGDISIVHKLLKEGYEVNAFDGEGFTPLMLAARGCRGEMCELLISYGAECDIQNERHETALSLSIENGAGNDAERVILDELARKLVLGGHRVKKHTKCGKGSPHGKLLQMIGAAGILRWGKSSKRNVICKEAEVGPSVKFRWNRRRKFDVEEPGLFHVVTTKDKEVHFVCEGGVEMADLWVRGIQLVTREAISGRRAPEV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11516g00003 715 Gene3D - 19 215 IPR036770 -
Vium11516g00003 715 ProSiteProfiles Ankyrin repeat region circular profile. 538 570 - -
Vium11516g00003 715 Gene3D - 258 384 IPR036770 -
Vium11516g00003 715 SUPERFAMILY Ankyrin repeat 264 589 IPR036770 -
Vium11516g00003 715 Pfam Ankyrin repeats (3 copies) 268 362 IPR002110 GO:0005515
Vium11516g00003 715 Pfam Ankyrin repeats (3 copies) 510 589 IPR002110 GO:0005515
Vium11516g00003 715 ProSiteProfiles Ankyrin repeat region circular profile. 300 328 - -
Vium11516g00003 715 SUPERFAMILY Ankyrin repeat 28 291 IPR036770 -
Vium11516g00003 715 Gene3D - 492 618 IPR036770 -
Vium11516g00003 715 ProSiteProfiles Ankyrin repeat region circular profile. 85 115 - -
Vium11516g00003 715 ProSiteProfiles Ankyrin repeat region circular profile. 263 292 - -
Vium11516g00003 715 ProSiteProfiles Ankyrin repeat region circular profile. 437 464 - -
Vium11516g00003 715 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Vium11516g00003 715 Gene3D - 385 491 IPR036770 -
Vium11516g00003 715 ProSiteProfiles Ankyrin repeat profile. 538 570 IPR002110 GO:0005515
Vium11516g00003 715 ProSiteProfiles Ankyrin repeat profile. 505 537 IPR002110 GO:0005515
Vium11516g00003 715 ProSiteProfiles Ankyrin repeat profile. 300 332 IPR002110 GO:0005515
Vium11516g00003 715 SMART ANK_2a 117 146 IPR002110 GO:0005515
Vium11516g00003 715 SMART ANK_2a 538 567 IPR002110 GO:0005515
Vium11516g00003 715 SMART ANK_2a 505 534 IPR002110 GO:0005515
Vium11516g00003 715 SMART ANK_2a 176 205 IPR002110 GO:0005515
Vium11516g00003 715 SMART ANK_2a 263 292 IPR002110 GO:0005515
Vium11516g00003 715 SMART ANK_2a 333 362 IPR002110 GO:0005515
Vium11516g00003 715 SMART ANK_2a 437 466 IPR002110 GO:0005515
Vium11516g00003 715 SMART ANK_2a 85 114 IPR002110 GO:0005515
Vium11516g00003 715 SMART ANK_2a 300 329 IPR002110 GO:0005515
Vium11516g00003 715 ProSiteProfiles Ankyrin repeat profile. 437 469 IPR002110 GO:0005515
Vium11516g00003 715 PANTHER ANKYRIN REPEAT-CONTAINING 22 700 - -
Vium11516g00003 715 ProSiteProfiles Ankyrin repeat profile. 263 295 IPR002110 GO:0005515
Vium11516g00003 715 ProSiteProfiles Ankyrin repeat region circular profile. 505 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11516g00003 Vium-Chr11516 11529 16805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11516g00003 288 486 Ion Channels AT2G25600 25.871 6.04e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11516g00003 - - gmx:100795638 1084.32