Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1150g00004 ATGACCATGGTTCCTTCTCAAAACGGGAAACATCAGAACATTAACAGGAGTGGTGATTATGTTATTTACGGTAGCACGACAACGAGTAGTGCTATGAACCAGATCATTGAAGTAGAAGGAGGCTACAATTGCTTACTAGGATCTGATTTTGTGGTGAGGAGGCACATCATGGCTGAGGCGGAAGAATCGTCCAGACACAACAACAACGAGGAAGCTGAACCTGGTGGCTGTGGTTCGACCTCAAAGGATGAAGAAGTAGAAGGAGCAAACACAAACACCAACACCAACACCAACAACAATAATAACAATAACTGGCTTCAATTAGGCATAGGTTTGACGAGCACAAAGGAAGAACTTGATCGAACCGTTCCAACAACAATCGCCTCAGGGCCTGTGGAGTTAGACTTGCTGCCCTCACGGCGGAGGTTCGATCAGCCGGCGGCGTTTTTTCCGGTGGTGACTGCCGGGAGAGGAGGAGGGTCTGGTTTTGGTGGTTCTTCTTCTTTGGTTTTCGAGCATCAAACGACGTCGCCTTCTTCCATGTCCATGGCAAGTGGTCCAATTGCCTCAACCTTTGGTCATCAAGAGATGATGAACTGGGCATTTGGTCCACTGCTTCCTCCTTCTATGTCTATTATGCCATCTTCTTCCTCTTTCACTCCTCTTCCACCTCCTCCTTCTTCTTCTTCTTCTTCCTCATCACAAACCTGTCACTCCTCTTTCAGGCCTCCCTTAGGATCCTACTTTCCCACACCCTTTCATCACTTTCCTTCTTCTTCTTCTTCTGGATTTAATCAATACGACGTGGCCGGGGCAGGACCAAGCTCCGATGTCACTGTTCGAGTTGTTGATCCTCCCAGAAGACCTCATTCTGGAATATGGTTCATGTTACAAGCCTCTCAGAATCAGGCGAAAGAACCATTCTTGCCACAAATACCTAAGAACTACCTTAGAATTAAAGACGGAAGGATGACAGTTCGGTTGCTATTGAAGTATCTGGTTAGCAAACTCAGACTGGAAAGCGAATCAGAGATAGAGATAACATGCAGAGGGCAGCAACTTTTACCTTTCTTGACGTTGCAGCATGTGAGGGATAACATATGGAGTCTCAGAGACACCACAACATCTTTGCTTTCAGATTCCTCAACCTCGGATCATGTCATGGTGCTCCATTATGGTAGAACCACTGCTTAA 1194 0.4648 MTMVPSQNGKHQNINRSGDYVIYGSTTTSSAMNQIIEVEGGYNCLLGSDFVVRRHIMAEAEESSRHNNNEEAEPGGCGSTSKDEEVEGANTNTNTNTNNNNNNNWLQLGIGLTSTKEELDRTVPTTIASGPVELDLLPSRRRFDQPAAFFPVVTAGRGGGSGFGGSSSLVFEHQTTSPSSMSMASGPIASTFGHQEMMNWAFGPLLPPSMSIMPSSSSFTPLPPPPSSSSSSSSQTCHSSFRPPLGSYFPTPFHHFPSSSSSGFNQYDVAGAGPSSDVTVRVVDPPRRPHSGIWFMLQASQNQAKEPFLPQIPKNYLRIKDGRMTVRLLLKYLVSKLRLESESEIEITCRGQQLLPFLTLQHVRDNIWSLRDTTTSLLSDSSTSDHVMVLHYGRTTA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1150g00004 397 MobiDBLite consensus disorder prediction 61 103 - -
Vium1150g00004 397 Gene3D - 287 392 - -
Vium1150g00004 397 PANTHER RING FINGER PROTEIN 1 395 IPR044171 GO:0007275
Vium1150g00004 397 MobiDBLite consensus disorder prediction 214 239 - -
Vium1150g00004 397 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1150g00004 Vium-Chr1150 55603 68844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1150g00004 306 393 C3H Transcription Factor Family AT3G23060 38.043 1.38e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1150g00004 - - pvu:PHAVU_008G0188001 462.611