Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium114g00001 ATGGGAGACGCAAGTGAAGTGAAAGGGGAATGTTCAGGCAGTGGGAAGGGGAAGAAGATGTTTGAGGAAGAAGAAAATGAAGACAAGTTGTTGGCAGGCGTAGGATACAAAGTGTGTTCCTCGGACATGGTTGACGTGGCACACAAGCTCGACCAATTGGAGATGGTAATGGAGGAAGATGGGATTTCCCATCTCGCCTCCAACACTGTGCATTACGACCCGACCGATCTTTACGGTTGGGTCCAGAACATTCTCAACAACGCGCCCAATCACACCATCACCACCAACAGCAACAACGCTGTCATTCCATCGCCGTTAATCACTGTCCCCGAGAACGATCTAACAGCGATTCCATTGCCATACGTCGAAGATTATCCACAAACAGAAAATCAGAATTGCCACAAGCGATTCAAGAGTTCTTCATCTCCGTTGTGGCCCGCGATTTCATCGGACAACATTCTTCCGGTGGTTCTGGTGGAGGAAGCCGGCGTGTATCTCGTCCATGCACTCATGGCCTGCGCGGAGGCCGTTCAATTAGGAAACGCGAGCCTCGCTTCAAGCCTTGTGAAGCATGCAGGAACCCTCGCTGTGTCGCAAGGAGGTTCAATGGGGAAGGTTGCATCGTTCTTCGCTCAAGCTCTGGCTCGAAGAATCTATGGATTCTATCCTTACGAAACTCTAGACTCTTCCTACTCCGACATGCTTCACACACATTTCTACGAATCGAGCCCGTACCTGAAATTCGCGCACTTCACGGCGAACCACGCAATCCTCGAAGCATTCGCCACCGCGGACACGGTGCATGTCATCGATTTTGGCCTGAAGCAGGGGTTGCAGTGGCCGGCGTTCATGCAAGCACTAGCGGTCCGTCCGGGGGGTCCGCCAGCGTTCCGCCTCAGCGGGATCGGACCGCCGCGGCTCGACGACCCCGATTCCGACACGCTTAGTCAGGTCGGTTTGAAACTGGCGGAACTCGCTCGAAAAATTAGGATTCAATTTCAGTTCCGCGGATTCGTGTGTAACAGTTTAGCTGATCTAGATCCGTCCGTTCTCGACATCCGAGCAGGAGAATTCGTCGCGGTTAACTCTATCTTCGAGCTTCACCGCTTGCTGGCGCGACCTGTTGACATTGAAAAGGTGTTAGCCACGGTTAAGAGGATTAAACCGGAGATTGTTACCGTGGTGGAGCAAGAAGCGAATCACAACGGTCCGGTTTTTCTGGAGCGGTTCACGGAGGCATTGTACTATTACTCTAGTTTGTTTGACTCGATGGAGGGATCGGTGGCGGCGCCGAATGAACAGGCGTTGGTGATGGCGGAGATGTACTTGGGGAGGCAGATATGTAACGTTGTGGCGTGTGAGGGAGATGAACGAGTGGAGAGGCACGAAACGCTGGGTCAGTGGAGAGCGCGGCTCGGTTTGGGCGGGTTGGAACCGGTTCGCATGGGTTCGAACGCGTTTAGACAGGCGAGGATGTTGCTTGGTCTATACCCTGAGGCGGGAGAAGGGTACAGAGTGGAAGAAAACAATGGGTGCCTCTTGCTCGGGTGGCACACGAGGCCACTCGTTGCCTCGTCCGCGTGGAGACTCGCGCCCAATGGTTTGCACCCAGTTAGAGATCAGAATGAGATGAACCAAGATTCCCGATACTGTTAA 1656 0.5344 MGDASEVKGECSGSGKGKKMFEEEENEDKLLAGVGYKVCSSDMVDVAHKLDQLEMVMEEDGISHLASNTVHYDPTDLYGWVQNILNNAPNHTITTNSNNAVIPSPLITVPENDLTAIPLPYVEDYPQTENQNCHKRFKSSSSPLWPAISSDNILPVVLVEEAGVYLVHALMACAEAVQLGNASLASSLVKHAGTLAVSQGGSMGKVASFFAQALARRIYGFYPYETLDSSYSDMLHTHFYESSPYLKFAHFTANHAILEAFATADTVHVIDFGLKQGLQWPAFMQALAVRPGGPPAFRLSGIGPPRLDDPDSDTLSQVGLKLAELARKIRIQFQFRGFVCNSLADLDPSVLDIRAGEFVAVNSIFELHRLLARPVDIEKVLATVKRIKPEIVTVVEQEANHNGPVFLERFTEALYYYSSLFDSMEGSVAAPNEQALVMAEMYLGRQICNVVACEGDERVERHETLGQWRARLGLGGLEPVRMGSNAFRQARMLLGLYPEAGEGYRVEENNGCLLLGWHTRPLVASSAWRLAPNGLHPVRDQNEMNQDSRYC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium114g00001 551 MobiDBLite consensus disorder prediction 1 22 - -
Vium114g00001 551 ProSiteProfiles GRAS family profile. 157 529 IPR005202 -
Vium114g00001 551 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 132 524 IPR005202 -
Vium114g00001 551 Gene3D - 26 87 IPR038088 -
Vium114g00001 551 Pfam GRAS domain family 166 529 IPR005202 -
Vium114g00001 551 SMART DELLA_2 28 98 - -
Vium114g00001 551 Pfam Transcriptional regulator DELLA protein N terminal 28 87 IPR021914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium114g00001 Vium-Chr114 2263 4545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium114g00001 20 531 GRAS Transcription Factor Family AT2G01570 55.258 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium114g00001 GRAS 3.4e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium114g00001 K14494 - gmx:100799695 645.966