Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1149g00002 ATGGGGATGGCTGCAGCAGAGTCGCAGTTTCATGTGTTGGCTGTTGATGACAGCATCATAGATAGGAAACTCATCGAGAGACTCCTCAGAACCTCTTCCTACCAAGTTACTACGGTTGATTCTGGTAGCAAGGCTTTGGAGTTTCTGGGGTTGCGTGAGAATGAAAACACCAACCCAAGCATGCCATCTGTTTCTCCCAACAACAACCATCAGGAGGTGGAGGTGAATCTTGTGATTACAGATTACTGTATGCCTGGCATGACAGGCTATGACTTGCTTAAGAAAATCAAGGAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCATCTGAGAATGTGCCTTCAAGGATTAGCAGATGCTTGGAGGAAGGAGCAGAAGAATTTTTCTTGAAGCCTGTGAGGCTGTCAGATTTGAACAAGCTTAAACCCCACATGAAGAAAACTAAGTTGAAAGATCAAAGGCAAGTAACAGCAGAAGAGATTGAAAACTCAGAAGTTCTACAGCAACAGACACAGCAAATTCTCCAAATTGACCAGCAACAAGCACCAAAACCGCAAGATCCCCGACCAGAGTCAGAGTCACGTCCACAACCAACTATAGAACAACAGCAACAATCACTACAACAAGCCAACAATAACAAGAGGAAGACCATGGAACAGGGGCTTTCCCCTGAGACTGACAGAACAAGACCAAGATACAGCGGCATAGCTACTGTTGTATGA 729 0.4444 MGMAAAESQFHVLAVDDSIIDRKLIERLLRTSSYQVTTVDSGSKALEFLGLRENENTNPSMPSVSPNNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHMKKTKLKDQRQVTAEEIENSEVLQQQTQQILQIDQQQAPKPQDPRPESESRPQPTIEQQQQSLQQANNNKRKTMEQGLSPETDRTRPRYSGIATVV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1149g00002 242 ProSiteProfiles Response regulatory domain profile. 11 148 IPR001789 GO:0000160
Vium1149g00002 242 SMART REC_2 10 144 IPR001789 GO:0000160
Vium1149g00002 242 Gene3D - 11 232 - -
Vium1149g00002 242 SUPERFAMILY CheY-like 9 155 IPR011006 -
Vium1149g00002 242 Coils Coil 202 222 - -
Vium1149g00002 242 CDD REC_typeA_ARR 12 143 - -
Vium1149g00002 242 MobiDBLite consensus disorder prediction 169 242 - -
Vium1149g00002 242 MobiDBLite consensus disorder prediction 169 221 - -
Vium1149g00002 242 Pfam Response regulator receiver domain 12 142 IPR001789 GO:0000160
Vium1149g00002 242 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 215 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1149g00002 Vium-Chr1149 33324 35307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1149g00002 1 242 Response Regulator Gene Family AT3G57040 62.963 1.63e-97 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1149g00002 Response_reg 1.5e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1149g00002 K14492 - gmx:100788079 356.681