LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium11497g00001	ATGGACGCAACAGTCCCCAATGGTAAAGACGCTTTCTGCGTCACCGCCGCCAATGCCGCGGGGGACCCGCTCAACTGGGCCGCCGCGGCGGACGCGCTCTCGGGTAGCCATCTCGACGAGGTCAAGCGCATGGTCGCCGACTACCGCAAGCCCGCCGTCCGCCTCGGCGGCGAGACGCTCACCGTCGCTCAGGTGGCGGCGATTGCGGCGCACGACCAGGGTCTCAAGGTGGAGCTGGCGGAGGCCGCCAGGGCCGGCGTCAAGGCCAGCAGTGACTGGGTCATGGACAGCATGGACAAGGGTACCGACAGTTACGGTGTCACCACCGGCTTCGGTGCCACCTCCCACCGCCGTACCAAACAAGGTGGTGCCTTGCAGAAGGAGCTTATCAGGTTTTTGAATGCTGGGATATTTGGCAATGGTACAGAGGCGAATTGCACCCTACCCCACACTGCAACTAGAGCAGCTATGCTTGTGAGAGTGAACACTCTTCTCCAAGGGTACTCTGGAATCAGATTTGAAATTTTGGAGGCCATCACCAATCTTTTGAACAACAACGTTACTCCATGTTTGCCACTTAGGGGAACAATCACAGCATCTGGTGATCTTGTACCTTTGTCGTACATTGCCGGTTTGTTAACCGGCAGACCAAACTCGAAGGCTGTGGGTCCCTCTGGGGAGATTCTGAATGCCAAGGAAGCCTTTGAATTGGCCAACATTGGTTCCGAGTTCTTTGAGTTGCAACCTAAGGAAGGGCTTGCCCTTGTGAATGGTACGGCTGTTGGCTCTGGCTTGGCCTCCATAGTTCTCTTTGAAGCGAACATTCTGGCTGTCTTGTCGGAAGTTATTTCTGCAGTTTTTGCTGAAGTGATGCAAGGAAAGCCCGAGTTCACTGATCATTTGACTCACAAGCTAAAGCACCATCCTGGCCAGATTGAGGCTGCGGCTATCATGGAACACATTTTGGATGGAAGCTCTTACATCAAAGCTGCTAAGAAGTTGCATGAGATTGATCCTTTGCAGAAACCTAAACAAGACCGCTATGCCCTTAGGACTTCACCCCAATGGCTTGGTCCTCAAATCGAAGTGATCAGGTTTTCTACCAAGTCCATTGAGAGGGAGATAAATTCAGTCAACGACAACCCTTTGATTGATGTGTCAAGGAACAAGGCCTTGCATGGTGGTAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGATAACACCCGTTTGGCTCTTGCTTCCATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTATTACAATAATGGGTTGCCTTCAAATCTCACTGCCAGCAGAAACCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTACTGCTCTGAACTCCAATATTTGGCTAACCCTGTGACCAGCCATGTCCAAAGCGCGGAGCAACACAACCAAGATGTGAACTCTTTGGGATTGATTTCGTCTAGGAAGACCAATGAGGCTGTTGAGATCCTCAAGCTAATGTCTTCAACTTTCCTCGTTGCACTTTGCCAGGCCATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACTGTGAAGAATGTCGTGAGCCAAGTTGCCAAGAGGACTCTCACCACAGGTGTCAATGGAGAACTTCATCCTTCAAGATTTTGTGAGAAAGACTTGTTGAAAGTTGTTGATAGAGAATACACATATGCCTACATTGACGATCCCTGCAGTGGCACATACCCTTTGATGCAAAAACTAAGGCAAGTTCTTGTGGAATATGCATTGGCTAATGGAGAAAACGAGAAAAACTTGAACACGTCGATCTTCCAAAAGATTGCGTCCTTTGAGGAGGAGTTGAAAGCCCTCTTGCCTAAGGAAGTGGAAGGTGCAAGACTTGCATATGAGAATGACCAATGTGCAGTTCCCAACAAGATCAAGGAATGTAGGTCTTACCCCTTGTACAAGTTTGTGAGAGAGGAGTTAGGGACATCGTTGCTGACTGGTGAAAAGGTCATCTCACCCGGTGAAGAGTGTGACAAGGTGTTCACTGCTATGTGCCAAGGGAAAATCATTGATCCTCTTTTGGAATGCCTTGGAGAGTGGAATGGTGCTCCGCTTCCAATTTCTTAG	2142	0.4953	MDATVPNGKDAFCVTAANAAGDPLNWAAAADALSGSHLDEVKRMVADYRKPAVRLGGETLTVAQVAAIAAHDQGLKVELAEAARAGVKASSDWVMDSMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTEANCTLPHTATRAAMLVRVNTLLQGYSGIRFEILEAITNLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVISAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAVEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTYAYIDDPCSGTYPLMQKLRQVLVEYALANGENEKNLNTSIFQKIASFEEELKALLPKEVEGARLAYENDQCAVPNKIKECRSYPLYKFVREELGTSLLTGEKVISPGEECDKVFTAMCQGKIIDPLLECLGEWNGAPLPIS	713

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium11497g00001	713	Pfam	Aromatic amino acid lyase	60	540	IPR001106	-
	Vium11497g00001	713	Gene3D	-	13	259	IPR024083	-
	Vium11497g00001	713	NCBIfam	phenylalanine ammonia-lyase	22	702	IPR005922	GO:0005737\|GO:0006559\|GO:0016841
	Vium11497g00001	713	PANTHER	HISTIDINE AMMONIA-LYASE	21	712	IPR001106	-
	Vium11497g00001	713	Gene3D	-	526	647	IPR023144	-
	Vium11497g00001	713	SUPERFAMILY	L-aspartase-like	22	712	IPR008948	GO:0003824
	Vium11497g00001	713	ProSitePatterns	Phenylalanine and histidine ammonia-lyases signature.	195	211	IPR022313	GO:0016841
	Vium11497g00001	713	FunFam	Phenylalanine ammonia-lyase	13	259	-	-
	Vium11497g00001	713	FunFam	Phenylalanine ammonia-lyase	260	568	-	-
	Vium11497g00001	713	CDD	PAL-HAL	58	523	IPR001106	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium11497g00001	Vium-Chr11497	18289	26207	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium11497g00001	20	712	Monolignol Biosynthesis Gene Families	AT2G37040	83.550	0.0	1231

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium11497g00001	K10775		-	gmx:100803857	1328.15

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