Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1148g00006 ATGACTGGTGCAGAGAGGTACCCAGACTTCTTCAAAGTCTTCCTTCAAGAGCAGCACTCGGAAAGAATACTTATTCCCAATGCTTTTGTGAAGTTGGAACGGTTACAGGGAAAGATCCCTGAGGATGTCCTCCTCAGGAATAGTAGTGAGAGAGTGTGGCATGTTAAAACACGGTTTTTTGGAGACAGATTATATTTCGATGAAGGGTGGAAGATTTTCCATGAAGAAAACTGCTTAAGAAATGTAGATTTTCTGATATTTAGATATGACGGGGTTAATGAGTTCAGGGTCAAAATCCTTGAAAGATCAACACAGTGTGAGAAAACTCTGGTAAAGATGGAGGAGGAGGAAGGGAATGAAGAAGAGAAAGCAGCAACACAAGAAGTTGAAGAGACAGTGATAACACAGGAGGAACAAGCTGATGACTGTGACATAGAGGACGAGGAAGACAGTGAAGATCAGGACTACGATGACGATGACAATGACGATAGTGATTTTGATGAGAACACAGAGATGGAAGAACAGAGTGAAGAAGAAATCTTCGTTGATCCTGTTGGATACACCAGTCAAAGTTATCGAAAAACTTGCAGAAGGGACACTGCATCAAATTCGTACCCCCAGACTGAAGACCCTTTCAAAGAAGATGAATTTGACCCAGAAACGTGCATTCAGCCAGAGAATAATTTTTTTGAAGCAAAACTCTACAGAAGTAGACCCAACGAATTGCATATTCCAGGAATCGCCATTCAAGATTTTTCTCTCAGTTTTCCTGAAAAGATTACCCTTAAATGTTGTCAACACTGCCAGCGTAAGGATATTCAAAGAAACAAATTACAAGACTATCATCTCAACTTGGCACAAGAGACACCCATCAGAAAAAGATATTTAGAAGTGACGGGAAAAGTGTGTAGGTGGCAGGATGATAGAATATGTATCAAGGGTTGGGCAAACTTTAGCAGAAGGAACAAGATAAAAAATAATGATGTATGCATCTGTGAAGTTATATCAGACGAAGACCAAGTAGTAAGAACATTTCTGGTGCACGTTATAGGTACTAGGAGGGAATAA 1068 0.4017 MTGAERYPDFFKVFLQEQHSERILIPNAFVKLERLQGKIPEDVLLRNSSERVWHVKTRFFGDRLYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKILERSTQCEKTLVKMEEEEGNEEEKAATQEVEETVITQEEQADDCDIEDEEDSEDQDYDDDDNDDSDFDENTEMEEQSEEEIFVDPVGYTSQSYRKTCRRDTASNSYPQTEDPFKEDEFDPETCIQPENNFFEAKLYRSRPNELHIPGIAIQDFSLSFPEKITLKCCQHCQRKDIQRNKLQDYHLNLAQETPIRKRYLEVTGKVCRWQDDRICIKGWANFSRRNKIKNNDVCICEVISDEDQVVRTFLVHVIGTRRE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1148g00006 355 CDD B3_DNA 8 100 IPR003340 GO:0003677
Vium1148g00006 355 MobiDBLite consensus disorder prediction 134 180 - -
Vium1148g00006 355 ProSiteProfiles B3 DNA-binding domain profile. 8 103 IPR003340 GO:0003677
Vium1148g00006 355 SMART B3_2 10 103 IPR003340 GO:0003677
Vium1148g00006 355 Gene3D - 213 352 IPR015300 -
Vium1148g00006 355 Gene3D - 3 106 IPR015300 -
Vium1148g00006 355 Pfam B3 DNA binding domain 10 102 IPR003340 GO:0003677
Vium1148g00006 355 PANTHER B3 DOMAIN-CONTAINING 6 338 - -
Vium1148g00006 355 Coils Coil 110 130 - -
Vium1148g00006 355 SUPERFAMILY DNA-binding pseudobarrel domain 6 103 IPR015300 -
Vium1148g00006 355 SUPERFAMILY DNA-binding pseudobarrel domain 299 351 IPR015300 -
Vium1148g00006 355 MobiDBLite consensus disorder prediction 112 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1148g00006 Vium-Chr1148 54784 56830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1148g00006 1 349 B3 DNA Binding Superfamily AT3G06160 24.581 4.52e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium1148g00006 B3 1.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1148g00006 - - var:108340234 630.172