Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1148g00005 ATGACTGGTGCAGAGAGGTACCCAGACTTCTTCAAAGTCTTCCTTCAAGAGCAGCACTCGGAAAGAATACTTATTCCCAATGCTTTTGTGAAGTTGGAACGGTTACAGGGAAAGATCCCTGAGGATGTCCTCCTCAGGAATAGTAGTGAGAGAGTGTGGCATGTTAAAACACGGTTTTTTGGAGACAGATTATATTTCGATGAAGGGTGGAAGATTTTCCATGAAGAAAACTGCTTAAGAAATGTAGATTTTCTGATATTTAGATATGACGGGGTTAATGAGTTCAGGGTCAAAATCCTTGAAAGATCAACACAGTGTGAGAAAACTCTGGTAAAGATGGAGGAGGAGGAAGGGAATGAAGAAGAGAAAGCAGCAACACAAGAAGTTGAAGAGACAGTGATAACACAGGAGGAACAAGCTGATGACTGTGACATAGAGGACGAGGAAGACAGTGAAGATCAGGACTACGATGACGATGACAATGACGATAGTGATTTTGATGAGAACACAGAGATGGAAGAACAGAGTGAAGAAGAAATCTTCGTTGATCCTGTTGGATACACCAGTCAATTTTTTTTCCCCATATATGAGAGCATGAATCAGCCTTTACCCACTGATTTATCTTTCTTAGGGGACACTGCATCAAATTCGTACCCCCAGACTGAAGACCCTTTCAAAGAAGATGAATTTGACCCAGAAACGTGCATTCAGCCAGAGAATAATTTTTTTGAAGCAAAACTCTACAGAAGTAGACCCAACGAATTGCATATTCCAGGAATCGCCATTCAAGATTTTTCTCTCAGTTTTCCTGAAAAGATTACCCTTAAATGTTGTCAACACTGCCAGCGTAAGGATATTCAAAGAAACAAATTACAAGACTATCATCTCAACTTAGCACAAGAGACACCCATCAGAAAAAGATATTTAGAAGTGACGGGAAAAGTGTGTAGGTGGCAGGATGATAGAATATGTATCAAGGGTTGGGCAAACTTTAGCAGAAGGAACAAGATAAAAAATAATGATGTATGCATCTGTGAAGTTATATCAGACGAAGAACAAGTAGTAAGAACATTTCTGGTGCACGTTATAGGTACTAGGAGGGAATAA 1107 0.3984 MTGAERYPDFFKVFLQEQHSERILIPNAFVKLERLQGKIPEDVLLRNSSERVWHVKTRFFGDRLYFDEGWKIFHEENCLRNVDFLIFRYDGVNEFRVKILERSTQCEKTLVKMEEEEGNEEEKAATQEVEETVITQEEQADDCDIEDEEDSEDQDYDDDDNDDSDFDENTEMEEQSEEEIFVDPVGYTSQFFFPIYESMNQPLPTDLSFLGDTASNSYPQTEDPFKEDEFDPETCIQPENNFFEAKLYRSRPNELHIPGIAIQDFSLSFPEKITLKCCQHCQRKDIQRNKLQDYHLNLAQETPIRKRYLEVTGKVCRWQDDRICIKGWANFSRRNKIKNNDVCICEVISDEEQVVRTFLVHVIGTRRE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1148g00005 368 CDD B3_DNA 8 100 IPR003340 GO:0003677
Vium1148g00005 368 MobiDBLite consensus disorder prediction 134 180 - -
Vium1148g00005 368 ProSiteProfiles B3 DNA-binding domain profile. 8 103 IPR003340 GO:0003677
Vium1148g00005 368 SMART B3_2 10 103 IPR003340 GO:0003677
Vium1148g00005 368 Pfam B3 DNA binding domain 10 102 IPR003340 GO:0003677
Vium1148g00005 368 MobiDBLite consensus disorder prediction 112 181 - -
Vium1148g00005 368 Coils Coil 110 130 - -
Vium1148g00005 368 SUPERFAMILY DNA-binding pseudobarrel domain 6 103 IPR015300 -
Vium1148g00005 368 Gene3D - 3 106 IPR015300 -
Vium1148g00005 368 PANTHER B3 DOMAIN-CONTAINING 6 355 - -
Vium1148g00005 368 Gene3D - 226 365 IPR015300 -
Vium1148g00005 368 SUPERFAMILY DNA-binding pseudobarrel domain 312 363 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1148g00005 Vium-Chr1148 46492 48369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1148g00005 1 362 B3 DNA Binding Superfamily AT3G06160 23.352 8.66e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium1148g00005 B3 2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1148g00005 - - var:108340234 599.356