Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11470g00001 ATGGGGCATTTTTCATCTGCGTTCAATAGGTTGGCAAAGTCCTTTGCAACCAAGAGAAGTGGGAGTTCTGATGGATGCAACGGAAGAGAAGCTGCGGAAGCAATGGCAAAGGAAGCCAAAAAAAATCACTTCATGTTGCATAGCTCCGGCACCATTAATGTTGACGGTTCAGACAACTTTGCCTCACTTTTCTCCAAAAAAGGAAAGAAAGGAGTCAATCAGGATTGCTGCGTAGTATGGGAAGAATTTGGGTGCCAAGAGGACATGATTTTCTGCGGGATTTTTGACGGGCACGGGCCATGGGGTCACTTTGTGGCCAAGAGAGTAAGAGAGTCAATGCCACCATGTTTGCTATGCAACTGGCAGGAGACACTTTCCCAAACTTCACTTGATCCAGATGTTGATGTTGATATTACGGCAGAGAAAAAGCAACACCGGTTCAACATATGGAAGCACTCTTACTTGAAGACCTGTGCTGCCATTGATCGAGAACTAAAGCAGAATCGCAAGATAGATTCATTTTTCAGCGGAACAACTGCCCTGTCCATTGTTAGACAGGGTGAATTAATTGTCATTGCAAACGTTGGTGACTCTCGCGCCGTGTTAGCCACAGCATCAGATGATGGAAATTTGGTAGCAGTTCAGTTGACAGTAGATTTCAAGCCCAGTTTACCTCAGGAAGCGGAGAGAATAGTGGAGTGCAAAGGACGAGTTTTCTGCTTGGAAGACGAGCCTGGGGTGTACAGGGTGTGGTTACCGGACGAGGAGTCACCAGGACTTGCCATGTCAAGGGCTTTTGGTGACTACTGCGTCAAAGAGTATGGTCTTATTTCAGTGCCTGAAGTAACACACAGGAACATAACCAGCAAAGACCAGTTTGTTGTACTAGCCACTGATGGGGTGTGGGATGTAATCTCGAATCAAGAAGCAGTGGATATTGTGTGTTCAACAGCAGACAGAACAGAGTCTGCGAAACATTTGGTGGAGTGTGCGATGCGTGCATGGAAACGCAAGAGGAGGGGCATTGCAATGGACGATATTTCAGCTATTTGTCTCTTCTTTCACTCTTCCATCACTTCACCAAGTTCATGCCACCCTAGAATAGAACAGAACATTTATCATGTAAAATTGGCAAGTCAAGTGCCACTTGCAGTTGCATCCATGTAA 1167 0.4584 MGHFSSAFNRLAKSFATKRSGSSDGCNGREAAEAMAKEAKKNHFMLHSSGTINVDGSDNFASLFSKKGKKGVNQDCCVVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRESMPPCLLCNWQETLSQTSLDPDVDVDITAEKKQHRFNIWKHSYLKTCAAIDRELKQNRKIDSFFSGTTALSIVRQGELIVIANVGDSRAVLATASDDGNLVAVQLTVDFKPSLPQEAERIVECKGRVFCLEDEPGVYRVWLPDEESPGLAMSRAFGDYCVKEYGLISVPEVTHRNITSKDQFVVLATDGVWDVISNQEAVDIVCSTADRTESAKHLVECAMRAWKRKRRGIAMDDISAICLFFHSSXITSPSSCHPRIEQNIYHVKLASQVPLAVASM 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11470g00001 389 Pfam Protein phosphatase 2C 84 332 IPR001932 -
Vium11470g00001 389 SMART PP2C_4 51 352 IPR001932 -
Vium11470g00001 389 ProSiteProfiles PPM-type phosphatase domain profile. 60 354 IPR001932 -
Vium11470g00001 389 Gene3D - 51 357 IPR036457 -
Vium11470g00001 389 CDD PP2Cc 59 354 IPR001932 -
Vium11470g00001 389 PANTHER PROTEIN PHOSPHATASE 45 352 IPR015655 GO:0004722|GO:0006470
Vium11470g00001 389 SUPERFAMILY PP2C-like 61 355 IPR036457 -
Vium11470g00001 389 FunFam Probable protein phosphatase 2C 34 51 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11470g00001 Vium-Chr11470 5709 8708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11470g00001 1 355 PP2C-type Phosphatase Gene Family AT3G05640 69.553 0.0 531