Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1146g00002 ATGGATTTCTCTGAGGGTTATGTATCAAATGAGCATCGTGAGCTTCATCGATCTGCATCAGAAAGTGCGGATCCGTTGTCTGTTTCTCCATTGCAACTTGCTCCAAAATCTTCAAGGTCCCCTGAGTCTGCTAGGTCTCCAAAATCTCCGAGGTCCCCAAAGGTTCAAGGGAAGTGCAGCAGTCTAAGTCCGAGGACTCATAAACAATCACATTCTCAAAAAGATGGACGTCCAAAGAAAGGTGGTTCTGGGGGAAAAGGTACCTGGGGTGGATTGCTTGATACAGATGACTCAAGCGTTCTTGATCCTCATGATCCAAACTATGACAGCAGTGAGGAATATGACCATTCAAATGAAAAGAAGCCAAACACAGAGCTTGAGAGCTACAAGAAAAAGGCTACAATAATAGTGGAGGAGTATTTTGCCACTGATGATGTTGTTGCAACAATGAATGAAGTTAAAGAATTGGGAAAACCAGAGTATGGATACTATTTTGTCAAAAAACTTGTCTCTATGTCCATGGACAGGCATGACAAGGAAAAAGAAATGGCTGCTATTCTGCTCTCTGCACTTTATGCTGACGTATTTGATCCTGCACAAGTTTACAAGGGCTTCAGCAAATTAGTTGAATCAACAGATGACTTGATTGTAGATATACCAGACGCAGTTGAAGTTCTAGCACTTTTCATAGCTAGGGCCGTGGTTGATGACATACTTCCTCCTGCATTTTTGAAGAAACAGATGGCCTACTTAGCGAAAGATTCAAAAGGGGTTGATGTGTTGAAAAAAACTGAGAAAAGCTATCTAGCAGCTCCTCTTCATGCAGAAATCATAGAGAGATGCTGGAGAGGTAGTAAGAACACCACAGTGGATGATGTTAAAGCTAAGATAAACAACTTTTTGAAGGAGTATGTTGTAAGTGGTGACAAGAAAGAAGCATTCAGATGCATCAAAGATCTGAAAGTTCCTTTCTTCCATCATGAAATAGTGAAACGGGCCCTTATAATGGCAATGGAGAGACGTCAAGCAGAATCCCCACTATTAGATCTGTTGAAGGAAGCAGCTGAAGAAGGTTTCATCAACACTAGCCAAATGTCCAAAGGTTTCAGTCGGCTAATTGACACAGTTGATGACTTATCACTTGACATACCAAATGCACGAGGAATACTGCAGAAACTTATTTCCAAAGCAGCATCTGAGGGTTGGTTATGTGTGTCATCTTTGAAATCACTTTCAGTAGAGCCTGAAAAGAACACAATAGAAGATAGTGCTGCCAAAAGTTTCAAGGTAAAGACTCAGTCCATCATTCAAGAGTACTTCTTATCAGGTGATATATTGGAGGTAAATAGCTGTATCGAACAAGAAAACAGCAAGAACTGTGCTGCACTGAATGCAATCTTCGTTAAAAAACTGATAACTCTGGCAATGGATAGGAAGAATAGAGAGAAGGAGATGGCTTCTGTGTTGCTGTCATCTCTGTGTTTCCCAGCTGATGATGTGGTGAGTGGTTTTGTGATGTTGATAGAGTCAGCAGATGACACTGCTCTGGACAATCCTGTGGTTGTTGAGGATCTTGCTATGTTTCTAGCCAGAGCAGTGGTGGATGAAGTGCTAGCTCCACAACACCTTGAGGAGATTGGAACACAGTGTTTGGGGCCAGGTTCAATTGGGAGCAGAGTTCTTCAAATGACAAAGTCATTGCTAAAGGCTAGACTTGCAGGGGAGAGAATCTTGAGGTGTTGGGGTGGTGGGGGTAGTAGCAGGCCTGGATGGGCGTTTGAGGATGTGAAGGACATGATTGGGAAGCTGTTGGAGGAGTATGAATCTGGAGGAGAAATAAAGGAGGCATGTCGCTGCATGAAAGAGTTAGGAATGCCATTCTTCCATCATGAGGTTGTTAAGAAAGCTTTGGTGACAACCATTGAAAAGAAGAATGAGAGGTTGTGGGGTCTACTCAAGGAGTGTTTTGAATCAGGACTCATAACCTTGAATCAAATGGCCAAGGGTTTTGGAAGGGTTGCAGAATCTCTTGATGACTTGGCCTTAGATGTCCCTGATGCTAAAAACCAGTTTGCATACTATGTTGAAAGAGCAAAGACTAATGGATGGTTGGACAATTCATTTTCTTTCACCAAACAGGAACATGCAACAGAGAATGGCACTCACTAA 2169 0.4237 MDFSEGYVSNEHRELHRSASESADPLSVSPLQLAPKSSRSPESARSPKSPRSPKVQGKCSSLSPRTHKQSHSQKDGRPKKGGSGGKGTWGGLLDTDDSSVLDPHDPNYDSSEEYDHSNEKKPNTELESYKKKATIIVEEYFATDDVVATMNEVKELGKPEYGYYFVKKLVSMSMDRHDKEKEMAAILLSALYADVFDPAQVYKGFSKLVESTDDLIVDIPDAVEVLALFIARAVVDDILPPAFLKKQMAYLAKDSKGVDVLKKTEKSYLAAPLHAEIIERCWRGSKNTTVDDVKAKINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAESPLLDLLKEAAEEGFINTSQMSKGFSRLIDTVDDLSLDIPNARGILQKLISKAASEGWLCVSSLKSLSVEPEKNTIEDSAAKSFKVKTQSIIQEYFLSGDILEVNSCIEQENSKNCAALNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPADDVVSGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGTQCLGPGSIGSRVLQMTKSLLKARLAGERILRCWGGGGSSRPGWAFEDVKDMIGKLLEEYESGGEIKEACRCMKELGMPFFHHEVVKKALVTTIEKKNERLWGLLKECFESGLITLNQMAKGFGRVAESLDDLALDVPDAKNQFAYYVERAKTNGWLDNSFSFTKQEHATENGTH 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1146g00002 722 FunFam programmed cell death protein 4 118 271 - -
Vium1146g00002 722 ProSiteProfiles MI domain profile. 128 249 IPR003891 -
Vium1146g00002 722 MobiDBLite consensus disorder prediction 1 20 - -
Vium1146g00002 722 Pfam MA3 domain 294 403 IPR003891 -
Vium1146g00002 722 Pfam MA3 domain 597 705 IPR003891 -
Vium1146g00002 722 Pfam MA3 domain 130 240 IPR003891 -
Vium1146g00002 722 Pfam MA3 domain 429 538 IPR003891 -
Vium1146g00002 722 SUPERFAMILY ARM repeat 122 286 IPR016024 -
Vium1146g00002 722 ProSiteProfiles MI domain profile. 427 548 IPR003891 -
Vium1146g00002 722 MobiDBLite consensus disorder prediction 22 67 - -
Vium1146g00002 722 Gene3D - 115 267 - -
Vium1146g00002 722 Gene3D - 416 571 - -
Vium1146g00002 722 MobiDBLite consensus disorder prediction 98 126 - -
Vium1146g00002 722 ProSiteProfiles MI domain profile. 292 413 IPR003891 -
Vium1146g00002 722 SUPERFAMILY ARM repeat 592 709 IPR016024 -
Vium1146g00002 722 SUPERFAMILY ARM repeat 425 585 IPR016024 -
Vium1146g00002 722 SMART ma3_7 596 705 IPR003891 -
Vium1146g00002 722 SMART ma3_7 129 240 IPR003891 -
Vium1146g00002 722 SMART ma3_7 428 539 IPR003891 -
Vium1146g00002 722 SMART ma3_7 293 404 IPR003891 -
Vium1146g00002 722 SUPERFAMILY ARM repeat 289 409 IPR016024 -
Vium1146g00002 722 Gene3D - 579 712 - -
Vium1146g00002 722 Gene3D - 278 411 - -
Vium1146g00002 722 PANTHER PROGRAMMED CELL DEATH 4 17 708 IPR039778 GO:0045892
Vium1146g00002 722 ProSiteProfiles MI domain profile. 595 714 IPR003891 -
Vium1146g00002 722 MobiDBLite consensus disorder prediction 1 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1146g00002 Vium-Chr1146 11026 15410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1146g00002 603 705 Eukaryotic Initiation Factors Gene Family AT5G57870 33.019 1.22e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1146g00002 - - gmx:102668745 1284.24