Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1145g00002 ATGGTCGACCCGGCACCATCCTCAGAATCAGAGACCAGAAACGCCGTCAGTTCTGCTTCTTCGCCGTCATCGTCGTCGTCGAGTTCTAAGAAACGAGGAAGAACCAACGACGGCAATGGTAGTAGTAGTAACGACAGCAAGCATTCGGTGTACAGAGGAGTCAGAATGCGGACGTGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGCGAAAAAAGAACCGAATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGTGCGCACGACGTGGCGGCGCTTACCATAAAGGGCTCCTCGGCCATCCTTAACTTCCCCGAACTCGCCGCCTCGCTGCCGCGCCCCGCCTCCAACTCCCCCCGCGACGTGCAGGCTGCGGCGGCCAAGGCCGCCTCCATGGAGGCGCCGCCTCCTCGGACCCCTCCCTCCCCCGCCGCAGCGCCGGAGGACGACCTCGGCGAGATTGTGGAGCTGCCGCCTCTGGGGTCCATCTTCGACTCGCCCGACCCGAATACGGAGTTCGTGTTCGTCGACCCGGATGAAGGGTGGCCCTATCCTCAACCGTGGTGTCACGGCATTTATGACGGTGGGTACTTCATCGGCGACACGAACATGGTTTCAATGCAAGAGTCAGAAAGCATGGTTCTTTCCTTATGGCCTTGA 666 0.6141 MVDPAPSSESETRNAVSSASSPSSSSSSSKKRGRTNDGNGSSSNDSKHSVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAASLPRPASNSPRDVQAAAAKAASMEAPPPRTPPSPAAAPEDDLGEIVELPPLGSIFDSPDPNTEFVFVDPDEGWPYPQPWCHGIYDGGYFIGDTNMVSMQESESMVLSLWP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1145g00002 221 MobiDBLite consensus disorder prediction 114 149 - -
Vium1145g00002 221 SUPERFAMILY DNA-binding domain 49 108 IPR016177 GO:0003677
Vium1145g00002 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 162 - -
Vium1145g00002 221 CDD AP2 49 109 IPR001471 GO:0003700|GO:0006355
Vium1145g00002 221 MobiDBLite consensus disorder prediction 1 49 - -
Vium1145g00002 221 MobiDBLite consensus disorder prediction 7 49 - -
Vium1145g00002 221 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Vium1145g00002 221 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Vium1145g00002 221 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Vium1145g00002 221 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vium1145g00002 221 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Vium1145g00002 221 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Vium1145g00002 221 FunFam Ethylene-responsive transcription factor 2 49 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1145g00002 Vium-Chr1145 25444 26678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1145g00002 19 195 AP2-EREBP Transcription Factor Family AT5G25810 51.777 8.16e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium1145g00002 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1145g00002 K09286 - gmx:100804801 320.087