Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11454g00001 ATGCATAGAGGTGTTCTTCAGAGCTCACCAGTGCAACAAATGATGGCTGGAAACCCTAACTGGTGGAACATCAATATCAATACCATGCCTCCACAAGCTCCTCCTTTCTTCTCCACTCCTTCAAACTTTTCCATCCCTTATGCTCCCTCTTCTCTCCCCTTTCCTTCTTGGAATGAAAATCAAGACCTTCCTGAGTCATGGAGCCAGCTACTCATGAGTGGGGTGGTGGATGAACAAGGTAAGGTTGGGATGGGCCAGTTTCAGACAAAGAAGTTGGAGAACTGGGAGGATCAAATGCTAGGTCAGCCTCCAAACGCTTCTCTTGTTGATGTTAAGCAAGAAAATTCAGTTAACAGCTATGTATACGGCCATGGAAACGAAGAGCTTCAGTCATCAAAGCCATCCTGGTCTCCGAAATCCTGTGCCACTAGTTTCAGTAGCAACATGTTAGATTTCACTAACAGTAGTAGCACAGATGCAAGGCTTCCTCCACCAGATCGATCTTCTGAGTGCAATAGCACTGCAGCTGGTGGGGCACTGAAGAAAGCTAGGGTTCAACCCTCTGCTACAACACAGGCTACATTCAAGGTCAGAAAGGAGAAGTTAGGCGACAGAATTACAGCTCTTCATCAGCTCGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGTGATGTTTCTTCTCCACTCTTTACTTTCCCAAACAACCACGAGCCTCTGA 771 0.4617 MHRGVLQSSPVQQMMAGNPNWWNININTMPPQAPPFFSTPSNFSIPYAPSSLPFPSWNENQDLPESWSQLLMSGVVDEQGKVGMGQFQTKKLENWEDQMLGQPPNASLVDVKQENSVNSYVYGHGNEELQSSKPSWSPKSCATSFSSNMLDFTNSSSTDARLPPPDRSSECNSTAAGGALKKARVQPSATTQATFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEVMFLLHSLLSQTTTSL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11454g00001 256 MobiDBLite consensus disorder prediction 154 180 - -
Vium11454g00001 256 MobiDBLite consensus disorder prediction 154 175 - -
Vium11454g00001 256 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 72 242 - -
Vium11454g00001 256 CDD bHLH_AtbHLH_like 194 242 IPR045239 -
Vium11454g00001 256 Gene3D - 186 254 IPR036638 GO:0046983
Vium11454g00001 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Vium11454g00001 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 252 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11454g00001 Vium-Chr11454 9 2352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11454g00001 1 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 42.675 3.68e-55 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11454g00001 - - vum:124820654 498.434