Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11448g00006 ATGTCACACCTATCATATATACCTTATTTTAGTTCATTTGTGGTGTCTATAACCCAAAAAAGAGAGAATATGTGTAACTCTTCGCTCCCATTGTTTCTTCTTTTGGTTCTCTGCATCGTTTTAGCCTCAGCTGATCCTTACTACGGAAACTCTGACTATAAACCTTCATCATCTTCATACACAACCACAACAAGTGACACTGTCTTCTCTCTTAAAGTACCAACGTTAGATGAAACCACATTCGATGATCTTCTATCCTTTGGTTACTACCGTAAAAGCTGCCCCCAGTTTGAGTCCATCCTACACAACAAACTGAAAGAATGGATCAAGAAGGACTACAGTTTAGGAGCTAGTCTCATGAGGCTCCACTTCCATGATTGCTCTGTCAGGGGATGTGACGGGTCTATTCTGTTGAAGCATGATGGAAGTGAGAGGACAGCAGAAGCTAGCAAGACACTGAGAGGGTTTGAAGTGGTGGATGATATCAAGACAGAATTAGAGAAACAATGTCCCAAGACTGTGTCTTGTGCTGACATTCTCACTGCTGCTGCACGGGATGCCACAGTTGAGGTAGGTGGACCTTATTGGGCCGTCCCTTACGGTAGGAAAGATGGTAAGGTCTCCATTGCTGAGGAAGCAGCTTTGGTGCCTATGGGCCATGAAAACATCACTTCCATGATTGAGTTTTTCCAGTCCAGAGGCATGTCTGTGCTTGACTTGGTCGTTCTCTCAGGGGCTCATACTATTGGAAGAACTTCATGTGGGTCCATTCAACATAGGCTATACAATTACCAAGGAACAGGAAAACCAGACCCAACAATAGATGGTAAGTATCTGAATTTCTTGCAAAGGAAGTGCAGATGGGCCTCAGAGTATGTGGATCTTGATGCTACAACACCAAAGATCTTTGACAATGTTTATTACATAAATCTGAAGAAGAAAATGGGGTTGTTATCTACTTATCAGTTGCTGTACTCAGATCCAAGGACTGCACCTCTTGTTTCAGCATTGACTGCTACTCATTCTGTCTTTGAACACCAATTTGCAGTGTCCATGGGAAAACTTGGCATTGTTGATGTTCTGACTGACCAAGATGAAGGAGAAATCAGGACCTATTGCAATTTTGTTAATGCTTATTGA 1140 0.4254 MSHLSYIPYFSSFVVSITQKRENMCNSSLPLFLLLVLCIVLASADPYYGNSDYKPSSSSYTTTTSDTVFSLKVPTLDETTFDDLLSFGYYRKSCPQFESILHNKLKEWIKKDYSLGASLMRLHFHDCSVRGCDGSILLKHDGSERTAEASKTLRGFEVVDDIKTELEKQCPKTVSCADILTAAARDATVEVGGPYWAVPYGRKDGKVSIAEEAALVPMGHENITSMIEFFQSRGMSVLDLVVLSGAHTIGRTSCGSIQHRLYNYQGTGKPDPTIDGKYLNFLQRKCRWASEYVDLDATTPKIFDNVYYINLKKKMGLLSTYQLLYSDPRTAPLVSALTATHSVFEHQFAVSMGKLGIVDVLTDQDEGEIRTYCNFVNAY 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11448g00006 379 Gene3D Peroxidase, domain 2 217 355 - -
Vium11448g00006 379 PRINTS Haem peroxidase superfamily signature 192 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 PRINTS Haem peroxidase superfamily signature 116 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 PRINTS Haem peroxidase superfamily signature 296 311 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 PRINTS Haem peroxidase superfamily signature 174 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 FunFam Peroxidase 217 355 - -
Vium11448g00006 379 ProSitePatterns Peroxidases active site signature. 116 127 IPR019794 GO:0004601
Vium11448g00006 379 CDD secretory_peroxidase 85 376 IPR033905 GO:0004601|GO:0042744
Vium11448g00006 379 FunFam Peroxidase 88 231 - -
Vium11448g00006 379 PRINTS Plant peroxidase signature 350 363 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 PRINTS Plant peroxidase signature 238 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 PRINTS Plant peroxidase signature 94 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 PRINTS Plant peroxidase signature 118 138 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 PRINTS Plant peroxidase signature 173 183 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 PRINTS Plant peroxidase signature 192 207 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 PRINTS Plant peroxidase signature 294 309 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 PRINTS Plant peroxidase signature 310 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 PRINTS Plant peroxidase signature 154 167 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 Gene3D - 88 377 - -
Vium11448g00006 379 PANTHER PEROXIDASE 25-RELATED 40 364 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 ProSiteProfiles Plant heme peroxidase family profile. 84 377 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 ProSitePatterns Peroxidases proximal heme-ligand signature. 239 249 IPR019793 -
Vium11448g00006 379 SUPERFAMILY Heme-dependent peroxidases 85 377 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium11448g00006 379 Pfam Peroxidase 103 337 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11448g00006 Vium-Chr11448 20624 22311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11448g00006 81 378 Peroxidase AT1G30870 59.333 4.49e-130 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11448g00006 K00430 - gmx:100527587 600.897