Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11448g00004 ATGAGAGAAGCATCAATGAGGATTTCAACCCTTGGCATTGTGCTCTTGTGTTTTTATTCTGCACTCCTTTGCCGTGGAAATGAGAGCACCATGAGAGTGCTTTTGGAGGTGAAATCATCGTTCACTCAAGACCCAGAAAATGTTTTAAGTGATTGGTCAGAGAACAACACCGATTACTGTAGCTGGAGAGGAGTGTCATGTGGATCAAAGAAGCTCAATGCTTTGGATGATGACGACGACTCGGTGCGAGTGGTGGGACTCAACCTTTCCGATTCGTCACTCGGTGGGTCCATTTCACCTTCACTCGGTCGTTTGCAAAACCTACTCCACCTTGATCTCTCTTCTAACCACCTAGAGGGTCCTATTCCATCTGCCCTCTCCAACTTAACTTCGTTGGAATCTCTCCTTCTCCACTCTAACCAACTCACCGGTCATATCCCCACCGAGTTAGACTCGCTAATGCAACTCCGAGTATTGCGAATCGGTAACAACCAACTCAATGGCCCGATTCCCGAGACACTTGGGTATATGCCCAGCCTTGAGTACCTTGGTTTGGCCTCATGCAGACTCAGCGGTCAGATCCCGGCCCAGCTAGGTCGACTCAGTGAGTTGCAATATTTGACTCTGCAGGAAAACGAGTTGACTGGGTCGATTCCGTACGAAGTGGGGTACTGCTGGAGCCTTGAAGTCTTCAGCGCCGCTGGGAACAGACTCAATGGCTCGGTTCCGAGTGAACTGAGTCTACTAAGGAAACTTCAAATTCTGAACCTCGCAAACAACAGCTTAACCGGGTCAATTCCGAGTCAACTCGGGCAGCTGAGTCAGCTTACATATCTGAATTTAATGGGTAACGAACTCGAGGGTCGTATTCCACCGTCTCTGGCTCAATTGGGTAAACTTCAAAATCTTGACTTGTCAAATAATACGCTCACTGGGGAAATTCCAAAGGAGTTAGGGAACATGGGTCAGTTACAATATTTGGTTCTCTCTGGGAACAAACTCCATGGAACCATTCCAAGAACCATATGTTCCAATGCAACAAGTTTGGAGAACTTGCTGATGTCAGATTGTGGACTACATGGTGAGATACCAGCTGAGTTGGGTCAGTGCCAATCCCTGAAACAACTTGATTTATCAGGCAATGATCTCAATGGGTCAATACCTATTGAGGTTTATGGGTTGATGGGGCTAACTGATCTCTTGCTTCACAACAACACTTTGGATGGTTCAATCTCTCCCTTCATAGGAAACCTCACTAACATGCAGATTCTTGCATTGTTTCATAACAACTTGCGGGGTAATCTGCCGAGAGAGATTGGGAGGCTTGGGAAATTGGAGATAATGTATCTTTATGATAATCAGTTATCAGGGAAGATTCCTTTCGAGATTGGTAACTGTTCAAGCTTGGAAATGGTTGATTTTTTTGGAAACCATTTCAGTGGTGAAATTCCCTTCACTATAGGGAGGCTGAAAGAGTTGAACTTTTTGCACCTTAGGCAGAATGAGCTTGTGGGTGTGATTCCCCCCACACTTGGGAACTGTCATAAACTGACTGTGCTGGATTTGGCAGATAATCGGCTCTCAGGTGGCATTCCTGCAACATTCGGATTCCTCAGAGAGTTGAAGCTGTTCATGCTCTACAACAATTCTCTTGAAGGTAGTCTTCCTCACCAACTTATAAATGTAGCAAACCTGACCAGAGTGAATCTTTCAAATAACAGACTGAATGGTAGTTTGGTTCCATTATGTAGCTCTAGTTCCTTTCTTTCTTTTGATGTCACAGATAATGAATTTGACGGTGAAATACCCTTTGTCCTGGGAAATTCACCTTCCCTTGACAGGCTGAGATTAGGTAACAACAAGTTTTCTGGTGAAATTCCAAGGACATTGGGAAAAATCACCGCATTGTCATTGTTAGACGTCTCAGGAAATTCACTCACAGGTGGAATACCAGACGAGCTTTCTTTGTGTAATAACCTGACACACGTTGATTTAAACAACAATCTTCTAACTGGACACATACCACCATGGCTTGGAAGTTTGTCTCAATTGGGAGAGGTTAAGCTCTCCTTCAATCAATTTTCTGGGTCTATTCCACTAGGCCTACTCAAACAGCCCAATTTGATTGTTCTTTCCTTGAATAACAATTCTCTCAATGGAAGTCTCCCAGGTGATATTGGTGATCTTGTATCTCTTAACACCCTCAGGCTGGACCATAATAACTTCTCTGGACCAATCCCTCAAGAAATAGGAAAATTGAGCAATCTTTATGAGCTGCAGCTATCTAGGAATGCCTTTAGTGGGGAAATACCAATTGAGATTGGAAGTCTCAAAAATATCCAAAGCATTTTGGACTTAAGTTACAATAATCTCTCTGGTCATATCCCATCTTCACTTAGCATGCTGTCAAAATTGGAAGTACTTAATCTTTCTCACAATGCACTCACTGGAGAAGTGCCTTCAGCAGTTGGTGAATTGACTAGCCTGCAGAAGCTTGACATCTCTTACAATAACCTTCAAGGAGCATTGGATAAGCAATTCTCCCGCTGGCCTCGAGAGTCATTTGAAGGGAACCTTCATCTTTGTGGAGCCTCTCTTGAAAGATGCAAAAGTGGTGATGGTTCCGGCAATAAACGATCAGTCTTCAGCAGCACATCAGTGGTTATTGTCTCTACACTTTCAGCTTTAGCTGCAATTGCTTTACTTACACTTGTAGTGATCGTCTTCTTTAAAACCAAGCAAGAATTTTTCAGGAGAGGCAGTGAAGTGAGTTTTGTTTTCTCCTCTTCATCACGAGCACATAAACGATCGTTGATCCCTCTAAACGTGCCTGCAAAGAGAGATTTCAGGTGGCACGATATCATGGGTTCCACAAACAATCTAAGCGACGAGTTCGTAGTTGGTTGTGGAGGTTCCGGGACAGTGTACAGAGTCGAATTGCCCTCTGGAGAGATCGTGGCTGTGAAGAAGATTTCAGGAAAAGATGATTATCTGTTGAACAAAAGCTTTATAAGAGAAATCAAAACTTTGGGGAGGGTCAAACATAGGCATCTGGTAAAACTGATGGGTTGTTGTAGCAACAGAATCAAAGGAACAGGTTGGAACCTATTGATATATGAGTATATGGAGAATGGGAGTGTTTGGGATTGGTTACATGGGGTGCCTCTCAAAGCAAAGAGGATCCTTGATTGGGACACAAGGTTCAAAATTGCAATGGGATTAGCTCACGGAGTGGAGTACCTCCATCATGATTGTGTGCCAAAGATCATTCACAGGGACATCAAATCCAGCAACATATTACTAGATTCCGACATGGAGGCACACCTGGGAGACTTTGGACTGGAAAAATCACTCGTTGAGAATCCAGAATCTAATGCATTGTCTAATTCTTGCTTTGCTGGATCTTATGGATACATAGCCCCAGAGTATGCATACTCACTAAAGGGCACAGAGAAAACTGATGTGTACAGCATGGGAGTGGTGTTTATGGAACTTGTTACTGGAAAAGTGCCAACAGATGCAGCTTTCGGAGCAGAGATGGACATGGTGAGATGGGTGAAGATGCAGCTTGAGAAGGAAGGCATTGCGGTTGAAGCAGTGATAGATCCTCAGCTGAAACCCCTTTTGCCTTGTGAAGAGTTTGCTGCATTGCAGGTGCTCGAGATAGCCATACACTGCACAAAAACTGCACCACAAGAGAGGCCAACATCAAGGCAAGTATGCAATCATCTCCTTCACGTATCCAACAACAAAATTGTGGATTTTGAGAAGAAAAATCTGGATCGTAACTGGTGA 3795 0.439 MREASMRISTLGIVLLCFYSALLCRGNESTMRVLLEVKSSFTQDPENVLSDWSENNTDYCSWRGVSCGSKKLNALDDDDDSVRVVGLNLSDSSLGGSISPSLGRLQNLLHLDLSSNHLEGPIPSALSNLTSLESLLLHSNQLTGHIPTELDSLMQLRVLRIGNNQLNGPIPETLGYMPSLEYLGLASCRLSGQIPAQLGRLSELQYLTLQENELTGSIPYEVGYCWSLEVFSAAGNRLNGSVPSELSLLRKLQILNLANNSLTGSIPSQLGQLSQLTYLNLMGNELEGRIPPSLAQLGKLQNLDLSNNTLTGEIPKELGNMGQLQYLVLSGNKLHGTIPRTICSNATSLENLLMSDCGLHGEIPAELGQCQSLKQLDLSGNDLNGSIPIEVYGLMGLTDLLLHNNTLDGSISPFIGNLTNMQILALFHNNLRGNLPREIGRLGKLEIMYLYDNQLSGKIPFEIGNCSSLEMVDFFGNHFSGEIPFTIGRLKELNFLHLRQNELVGVIPPTLGNCHKLTVLDLADNRLSGGIPATFGFLRELKLFMLYNNSLEGSLPHQLINVANLTRVNLSNNRLNGSLVPLCSSSSFLSFDVTDNEFDGEIPFVLGNSPSLDRLRLGNNKFSGEIPRTLGKITALSLLDVSGNSLTGGIPDELSLCNNLTHVDLNNNLLTGHIPPWLGSLSQLGEVKLSFNQFSGSIPLGLLKQPNLIVLSLNNNSLNGSLPGDIGDLVSLNTLRLDHNNFSGPIPQEIGKLSNLYELQLSRNAFSGEIPIEIGSLKNIQSILDLSYNNLSGHIPSSLSMLSKLEVLNLSHNALTGEVPSAVGELTSLQKLDISYNNLQGALDKQFSRWPRESFEGNLHLCGASLERCKSGDGSGNKRSVFSSTSVVIVSTLSALAAIALLTLVVIVFFKTKQEFFRRGSEVSFVFSSSSRAHKRSLIPLNVPAKRDFRWHDIMGSTNNLSDEFVVGCGGSGTVYRVELPSGEIVAVKKISGKDDYLLNKSFIREIKTLGRVKHRHLVKLMGCCSNRIKGTGWNLLIYEYMENGSVWDWLHGVPLKAKRILDWDTRFKIAMGLAHGVEYLHHDCVPKIIHRDIKSSNILLDSDMEAHLGDFGLEKSLVENPESNALSNSCFAGSYGYIAPEYAYSLKGTEKTDVYSMGVVFMELVTGKVPTDAAFGAEMDMVRWVKMQLEKEGIAVEAVIDPQLKPLLPCEEFAALQVLEIAIHCTKTAPQERPTSRQVCNHLLHVSNNKIVDFEKKNLDRNW 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11448g00004 1264 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1089 1101 IPR008271 GO:0004672|GO:0006468
Vium11448g00004 1264 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 484 580 - -
Vium11448g00004 1264 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 487 1244 - -
Vium11448g00004 1264 Gene3D Transferase(Phosphotransferase) domain 1 1042 1262 - -
Vium11448g00004 1264 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 290 389 - -
Vium11448g00004 1264 SMART serkin_6 961 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11448g00004 1264 Pfam Leucine Rich Repeat 659 681 IPR001611 GO:0005515
Vium11448g00004 1264 Pfam Leucine Rich Repeat 107 129 IPR001611 GO:0005515
Vium11448g00004 1264 ProSitePatterns Protein kinases ATP-binding region signature. 967 990 IPR017441 GO:0005524
Vium11448g00004 1264 FunFam Leucine-rich repeat receptor-like protein kinase 1042 1261 - -
Vium11448g00004 1264 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 196 - -
Vium11448g00004 1264 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 197 289 - -
Vium11448g00004 1264 PRINTS Leucine-rich repeat signature 802 815 - -
Vium11448g00004 1264 PRINTS Leucine-rich repeat signature 300 313 - -
Vium11448g00004 1264 SMART LRR_typ_2 201 225 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 418 442 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 562 587 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 826 857 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 297 320 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 753 777 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 681 705 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 129 153 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 706 729 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 321 345 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 802 825 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 490 514 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 249 273 IPR003591 -
Vium11448g00004 1264 SMART LRR_typ_2 105 128 IPR003591 -
Vium11448g00004 1264 SUPERFAMILY L domain-like 340 584 - -
Vium11448g00004 1264 ProSiteProfiles Protein kinase domain profile. 961 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11448g00004 1264 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 581 873 - -
Vium11448g00004 1264 SUPERFAMILY RNI-like 86 408 - -
Vium11448g00004 1264 Gene3D Ribonuclease Inhibitor 27 188 IPR032675 -
Vium11448g00004 1264 Gene3D Phosphorylase Kinase; domain 1 921 1041 - -
Vium11448g00004 1264 FunFam Uncharacterized protein 390 483 - -
Vium11448g00004 1264 Gene3D Ribonuclease Inhibitor 294 533 IPR032675 -
Vium11448g00004 1264 Pfam Protein kinase domain 966 1243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium11448g00004 1264 SUPERFAMILY L domain-like 581 866 - -
Vium11448g00004 1264 Pfam Leucine rich repeat 783 839 IPR001611 GO:0005515
Vium11448g00004 1264 Pfam Leucine rich repeat 516 575 IPR001611 GO:0005515
Vium11448g00004 1264 SUPERFAMILY Protein kinase-like (PK-like) 937 1245 IPR011009 -
Vium11448g00004 1264 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 923 1041 - -
Vium11448g00004 1264 Gene3D Ribonuclease Inhibitor 189 293 IPR032675 -
Vium11448g00004 1264 Pfam Leucine rich repeat N-terminal domain 33 67 IPR013210 -
Vium11448g00004 1264 Gene3D Ribonuclease Inhibitor 534 873 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11448g00004 Vium-Chr11448 11123 16228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11448g00004 45 731 Receptor kinase-like Gene Family AT1G73080 35.804 3.00e-102 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium11448g00004 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11448g00004 - - gmx:100797153 1962.19