Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11448g00002 ATGGCATCTTCCGAGGTTGAGATTGCTTCTTCCTCGCCCTTCGGTTCCGTTCTTAGAGACCGCAACCACCGCGAAGAATGCAGGGAAAGCAACGCCAAGGGCACGCATAATCATCATGCCAAGTTACAAAGAAACAACAAGAACTTTGTCACGGACATTAACACGTGCCGGGGGGTGTCTTCTGATTCCGCAACAAACGAAAACAACAGCGGCGGCAGCACGAACAAAGGCGTTAACCAGCGTAAGGCTCCCAAAAACAGTCGCTTGGAGAAACTTCGTTTCACACGAGCCAACTCCTTCAATGACAACGGCAGCAGCAACAACAACAACAAAAAGGAGACCTCTTTGTCCATGTTGATCAGCCCCAGACACTCACAGCTTCTCGATCGATGGGCAGCGAGACAGGCTCGGGAGATGGTGTCGAATTTGGAAAATGGGGCTGAACTGTTGTCAATGGATGACGTTGACATTTTCCCAAGGACACCCAGTTCGACATCTGAGGAAGAATCGTGCTCCTTGGAGATCCCTAATATGGCTGCCTCTTCTCTTGTTCAGATATGGGAGAAGAGACTGAAACAATCGGGTGTCTCCAAAACGAACACATCGTCTGAGAAGATTGGTTCGTCCTCTTCTCCCACGAATGAGAATGCTAATGCTTCATTCCCCGAGGAAGAATGCTTTGATGGACCCTCAGGGAATGAAGAAAGTTCCTTTCAGTCCTCACTTCCTGAGTGGGAATCGAGTGACCATTCCATTTCGCCACAAGCCAGGTCTGAGAGTGGTGTCAGTGTTGCTAGCATCATAAAGAAACTCACTTCTACCAGCCAGAATCAGAGTCCAACAGCTTCCTTTGTTGATGAGAATGACCAAGAAGGGTATTTTAGTAGTAGTGTGACAGGTTCTCCTTGTAGAGAGCGTGAATGTGGTCAACAACAACCACCTTCGGAGCATAAATTGGTGTGTCCCCTGCGAATTAGAGGGCGTCAGGCATTCAATGATTTGCTTATGCAGATGGAGAATGACAGGCTCAGGGAGCTCAACAACTTGTCAGAGCGTGGAACCGTGTCTAAGTTCGCACAAAGAGGTCGCATTCAGGCATTGCTTCGGATTAAATTATTGCAACGTGATCTGGTGGCTAATGATCGCTCCCGGCAGAATTCAACATCATGTGAAGTAAACAACAGACATTCACAAGGGTCTGCAATTATGCAATTAAGGGAAAGATTTTGCAGTGGGGTTGAACCTAGAATTCCGGTCCATGCAGAAGTAGCTAACCCAAGAAGTCCTCAAAGAGAGGCAGTTAACAAAACCACTCAATTGGGTAACTCTGCCACCACTAATCAAGTCAGAAAAGACACAAGAAACCAGACAGCTCATGGTAGTGCAAATCATGCCACAAAATCCCCGCAAAAGTCTGTTTCACATACTAGAATAGATCATAATACAGAAGAAGCTCCTCCAAGTTCAGATGTCATGATCCAAGAAACAAATCCACGTTCAGATGCCAAGGCTCAACACAATGACTCAAAAGAAACTAGTGAGGCAACGACGTCCATGACTGATTCAGGTCTAAAAGAGATGACAGACAGGGCAGAAGCGAGTAGCGAACAGAATGCTAATACTAAAAGTAGTAATGATGAGACAGTAAATGAAGAAGATATTAGTAACGAGCAGTATGCTGAATCCAGTTACCAGGAGACAGTAGAAGAGGCAAGTAATCAGAATTATGCTGAAAGCAGTTATGGTGATGAGATGGAGGGAGAGGAAACTGACCAGAATTGTGACTATGAAACTAATTATAACTGGATCAGTGAAATTTCTAGGCCTAAGAGCTATTGGGAAGAGCGCAGGCAAGCCTGGTATAGAGAGATGCTTGAAACTGGTTCTCAGAATGAGGATATAAGGAGGCTTCTTGAAAGAAGAACAGTGTCAAGTTTCCTTTCTAGTGACTTTCGGGATAGAATGGATAGATTGATGGAATCTCATAGGGGAACTCAAGCACATTTAGTCAATAGCCAGGACTATGAGGAAAACAGCCAAGAATTGATGGCATTTTTACAAGAACGCTTGCATTCTGCAAGAGCTTCTCAAGATGGAAGAGATGCAATTGAGGAAGAAGAGGAGGATAATGCAGATGAGCATGAGCATGAGGATGAGAGCTTGATAAGCGATCCATATCATGAAGCCGGTGGTTATTCTAATCGTTCCTCGTCATGCAGTTGCAGGGACAATGAAGCCGGTGACGATTTTGATAGAGTTGTTTCACCATCCCGACAACCTTATCAATCTCAATCTTTCTATCAGGACAGTCGGCAATCTGCATCTCCATCCACCAACCATCATTCAATGGAAATGGAACTCATATATGATTTGAGAGGGCACATGGAGCAACTCTATCACGAGATGTCTGACCTGAAGAAAATCATAAAGGGCTGCATGAATATGCAGATGGAATTACAACAAACCATGAAAGTAGAGATTAACTCAGTTGAAAAAGAAAAAAAGAAATCCCGTAACAGGACTCCAAAAAAGAAAGGCAACTGCTGCATTTGCTATGAGGTGAAAGTTGACTCTGTTTTGTACAGGTGTGGACACATGTGTGCGTGTCTCAAGTGTGCCATCGAGCTGCAATGTAACAGTGGAAAATGTCCCATATGTCGGGCTAAAATAGTGGATGTTGTTCGAGTATATATTGACGGTTAG 2703 0.4462 MASSEVEIASSSPFGSVLRDRNHREECRESNAKGTHNHHAKLQRNNKNFVTDINTCRGVSSDSATNENNSGGSTNKGVNQRKAPKNSRLEKLRFTRANSFNDNGSSNNNNKKETSLSMLISPRHSQLLDRWAARQAREMVSNLENGAELLSMDDVDIFPRTPSSTSEEESCSLEIPNMAASSLVQIWEKRLKQSGVSKTNTSSEKIGSSSSPTNENANASFPEEECFDGPSGNEESSFQSSLPEWESSDHSISPQARSESGVSVASIIKKLTSTSQNQSPTASFVDENDQEGYFSSSVTGSPCRERECGQQQPPSEHKLVCPLRIRGRQAFNDLLMQMENDRLRELNNLSERGTVSKFAQRGRIQALLRIKLLQRDLVANDRSRQNSTSCEVNNRHSQGSAIMQLRERFCSGVEPRIPVHAEVANPRSPQREAVNKTTQLGNSATTNQVRKDTRNQTAHGSANHATKSPQKSVSHTRIDHNTEEAPPSSDVMIQETNPRSDAKAQHNDSKETSEATTSMTDSGLKEMTDRAEASSEQNANTKSSNDETVNEEDISNEQYAESSYQETVEEASNQNYAESSYGDEMEGEETDQNCDYETNYNWISEISRPKSYWEERRQAWYREMLETGSQNEDIRRLLERRTVSSFLSSDFRDRMDRLMESHRGTQAHLVNSQDYEENSQELMAFLQERLHSARASQDGRDAIEEEEEDNADEHEHEDESLISDPYHEAGGYSNRSSSCSCRDNEAGDDFDRVVSPSRQPYQSQSFYQDSRQSASPSTNHHSMEMELIYDLRGHMEQLYHEMSDLKKIIKGCMNMQMELQQTMKVEINSVEKEKKKSRNRTPKKKGNCCICYEVKVDSVLYRCGHMCACLKCAIELQCNSGKCPICRAKIVDVVRVYIDG 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11448g00002 900 MobiDBLite consensus disorder prediction 44 82 - -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 1 17 - -
Vium11448g00002 900 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 823 899 IPR013083 -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 93 112 - -
Vium11448g00002 900 Coils Coil 820 840 - -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 430 472 - -
Vium11448g00002 900 CDD mRING-HC-C3HC5_NEU1 845 897 - -
Vium11448g00002 900 Pfam Zinc finger, C3HC4 type (RING finger) 845 892 - -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 295 315 - -
Vium11448g00002 900 ProSiteProfiles Zinc finger RING-type profile. 848 887 IPR001841 -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 756 781 - -
Vium11448g00002 900 SUPERFAMILY RING/U-box 847 892 - -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 193 220 - -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 193 259 - -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 18 36 - -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 421 590 - -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 1 112 - -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 555 580 - -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 232 259 - -
Vium11448g00002 900 MobiDBLite consensus disorder prediction 693 781 - -
Vium11448g00002 900 PANTHER BNAC05G24000D PROTEIN 1 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11448g00002 Vium-Chr11448 3867 8472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11448g00002 848 896 C3H Transcription Factor Family AT3G06140 40.816 4.73e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11448g00002 - - vun:114162588 1474.14