Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium11448g00002 | ATGGCATCTTCCGAGGTTGAGATTGCTTCTTCCTCGCCCTTCGGTTCCGTTCTTAGAGACCGCAACCACCGCGAAGAATGCAGGGAAAGCAACGCCAAGGGCACGCATAATCATCATGCCAAGTTACAAAGAAACAACAAGAACTTTGTCACGGACATTAACACGTGCCGGGGGGTGTCTTCTGATTCCGCAACAAACGAAAACAACAGCGGCGGCAGCACGAACAAAGGCGTTAACCAGCGTAAGGCTCCCAAAAACAGTCGCTTGGAGAAACTTCGTTTCACACGAGCCAACTCCTTCAATGACAACGGCAGCAGCAACAACAACAACAAAAAGGAGACCTCTTTGTCCATGTTGATCAGCCCCAGACACTCACAGCTTCTCGATCGATGGGCAGCGAGACAGGCTCGGGAGATGGTGTCGAATTTGGAAAATGGGGCTGAACTGTTGTCAATGGATGACGTTGACATTTTCCCAAGGACACCCAGTTCGACATCTGAGGAAGAATCGTGCTCCTTGGAGATCCCTAATATGGCTGCCTCTTCTCTTGTTCAGATATGGGAGAAGAGACTGAAACAATCGGGTGTCTCCAAAACGAACACATCGTCTGAGAAGATTGGTTCGTCCTCTTCTCCCACGAATGAGAATGCTAATGCTTCATTCCCCGAGGAAGAATGCTTTGATGGACCCTCAGGGAATGAAGAAAGTTCCTTTCAGTCCTCACTTCCTGAGTGGGAATCGAGTGACCATTCCATTTCGCCACAAGCCAGGTCTGAGAGTGGTGTCAGTGTTGCTAGCATCATAAAGAAACTCACTTCTACCAGCCAGAATCAGAGTCCAACAGCTTCCTTTGTTGATGAGAATGACCAAGAAGGGTATTTTAGTAGTAGTGTGACAGGTTCTCCTTGTAGAGAGCGTGAATGTGGTCAACAACAACCACCTTCGGAGCATAAATTGGTGTGTCCCCTGCGAATTAGAGGGCGTCAGGCATTCAATGATTTGCTTATGCAGATGGAGAATGACAGGCTCAGGGAGCTCAACAACTTGTCAGAGCGTGGAACCGTGTCTAAGTTCGCACAAAGAGGTCGCATTCAGGCATTGCTTCGGATTAAATTATTGCAACGTGATCTGGTGGCTAATGATCGCTCCCGGCAGAATTCAACATCATGTGAAGTAAACAACAGACATTCACAAGGGTCTGCAATTATGCAATTAAGGGAAAGATTTTGCAGTGGGGTTGAACCTAGAATTCCGGTCCATGCAGAAGTAGCTAACCCAAGAAGTCCTCAAAGAGAGGCAGTTAACAAAACCACTCAATTGGGTAACTCTGCCACCACTAATCAAGTCAGAAAAGACACAAGAAACCAGACAGCTCATGGTAGTGCAAATCATGCCACAAAATCCCCGCAAAAGTCTGTTTCACATACTAGAATAGATCATAATACAGAAGAAGCTCCTCCAAGTTCAGATGTCATGATCCAAGAAACAAATCCACGTTCAGATGCCAAGGCTCAACACAATGACTCAAAAGAAACTAGTGAGGCAACGACGTCCATGACTGATTCAGGTCTAAAAGAGATGACAGACAGGGCAGAAGCGAGTAGCGAACAGAATGCTAATACTAAAAGTAGTAATGATGAGACAGTAAATGAAGAAGATATTAGTAACGAGCAGTATGCTGAATCCAGTTACCAGGAGACAGTAGAAGAGGCAAGTAATCAGAATTATGCTGAAAGCAGTTATGGTGATGAGATGGAGGGAGAGGAAACTGACCAGAATTGTGACTATGAAACTAATTATAACTGGATCAGTGAAATTTCTAGGCCTAAGAGCTATTGGGAAGAGCGCAGGCAAGCCTGGTATAGAGAGATGCTTGAAACTGGTTCTCAGAATGAGGATATAAGGAGGCTTCTTGAAAGAAGAACAGTGTCAAGTTTCCTTTCTAGTGACTTTCGGGATAGAATGGATAGATTGATGGAATCTCATAGGGGAACTCAAGCACATTTAGTCAATAGCCAGGACTATGAGGAAAACAGCCAAGAATTGATGGCATTTTTACAAGAACGCTTGCATTCTGCAAGAGCTTCTCAAGATGGAAGAGATGCAATTGAGGAAGAAGAGGAGGATAATGCAGATGAGCATGAGCATGAGGATGAGAGCTTGATAAGCGATCCATATCATGAAGCCGGTGGTTATTCTAATCGTTCCTCGTCATGCAGTTGCAGGGACAATGAAGCCGGTGACGATTTTGATAGAGTTGTTTCACCATCCCGACAACCTTATCAATCTCAATCTTTCTATCAGGACAGTCGGCAATCTGCATCTCCATCCACCAACCATCATTCAATGGAAATGGAACTCATATATGATTTGAGAGGGCACATGGAGCAACTCTATCACGAGATGTCTGACCTGAAGAAAATCATAAAGGGCTGCATGAATATGCAGATGGAATTACAACAAACCATGAAAGTAGAGATTAACTCAGTTGAAAAAGAAAAAAAGAAATCCCGTAACAGGACTCCAAAAAAGAAAGGCAACTGCTGCATTTGCTATGAGGTGAAAGTTGACTCTGTTTTGTACAGGTGTGGACACATGTGTGCGTGTCTCAAGTGTGCCATCGAGCTGCAATGTAACAGTGGAAAATGTCCCATATGTCGGGCTAAAATAGTGGATGTTGTTCGAGTATATATTGACGGTTAG | 2703 | 0.4462 | MASSEVEIASSSPFGSVLRDRNHREECRESNAKGTHNHHAKLQRNNKNFVTDINTCRGVSSDSATNENNSGGSTNKGVNQRKAPKNSRLEKLRFTRANSFNDNGSSNNNNKKETSLSMLISPRHSQLLDRWAARQAREMVSNLENGAELLSMDDVDIFPRTPSSTSEEESCSLEIPNMAASSLVQIWEKRLKQSGVSKTNTSSEKIGSSSSPTNENANASFPEEECFDGPSGNEESSFQSSLPEWESSDHSISPQARSESGVSVASIIKKLTSTSQNQSPTASFVDENDQEGYFSSSVTGSPCRERECGQQQPPSEHKLVCPLRIRGRQAFNDLLMQMENDRLRELNNLSERGTVSKFAQRGRIQALLRIKLLQRDLVANDRSRQNSTSCEVNNRHSQGSAIMQLRERFCSGVEPRIPVHAEVANPRSPQREAVNKTTQLGNSATTNQVRKDTRNQTAHGSANHATKSPQKSVSHTRIDHNTEEAPPSSDVMIQETNPRSDAKAQHNDSKETSEATTSMTDSGLKEMTDRAEASSEQNANTKSSNDETVNEEDISNEQYAESSYQETVEEASNQNYAESSYGDEMEGEETDQNCDYETNYNWISEISRPKSYWEERRQAWYREMLETGSQNEDIRRLLERRTVSSFLSSDFRDRMDRLMESHRGTQAHLVNSQDYEENSQELMAFLQERLHSARASQDGRDAIEEEEEDNADEHEHEDESLISDPYHEAGGYSNRSSSCSCRDNEAGDDFDRVVSPSRQPYQSQSFYQDSRQSASPSTNHHSMEMELIYDLRGHMEQLYHEMSDLKKIIKGCMNMQMELQQTMKVEINSVEKEKKKSRNRTPKKKGNCCICYEVKVDSVLYRCGHMCACLKCAIELQCNSGKCPICRAKIVDVVRVYIDG | 900 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 44 | 82 | - | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Vium11448g00002 | 900 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 823 | 899 | IPR013083 | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 93 | 112 | - | - | |
Vium11448g00002 | 900 | Coils | Coil | 820 | 840 | - | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 430 | 472 | - | - | |
Vium11448g00002 | 900 | CDD | mRING-HC-C3HC5_NEU1 | 845 | 897 | - | - | |
Vium11448g00002 | 900 | Pfam | Zinc finger, C3HC4 type (RING finger) | 845 | 892 | - | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 295 | 315 | - | - | |
Vium11448g00002 | 900 | ProSiteProfiles | Zinc finger RING-type profile. | 848 | 887 | IPR001841 | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 756 | 781 | - | - | |
Vium11448g00002 | 900 | SUPERFAMILY | RING/U-box | 847 | 892 | - | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 193 | 220 | - | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 193 | 259 | - | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 18 | 36 | - | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 421 | 590 | - | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 1 | 112 | - | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 555 | 580 | - | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 232 | 259 | - | - | |
Vium11448g00002 | 900 | MobiDBLite | consensus disorder prediction | 693 | 781 | - | - | |
Vium11448g00002 | 900 | PANTHER | BNAC05G24000D PROTEIN | 1 | 899 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium11448g00002 | Vium-Chr11448 | 3867 | 8472 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium11448g00002 | 848 | 896 | C3H Transcription Factor Family | AT3G06140 | 40.816 | 4.73e-06 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium11448g00002 | - | - | vun:114162588 | 1474.14 |