Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11447g00002 TGTAGGAGGACTACTGGCCCAACCAGGCGCTCTACAAAAGGACAATGGACACCTGAAGAGGACGAGACTTTGCGGAAGGCTGTCCAGCGTTTTAAAGGAAAGAACTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTGCAATGCTTGCATAGGTGGCAGAAGGTCTTAAATCCTGAACTTGTCAAAGGTCCATGGTCTAAGGAGGAGGATGAAATCATTATTGATTTGGTGAATCGATATGGTCCCAAGAAGTGGTCTACTATCGCACAGAAGTTACCTGGACGCATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTACCATAAATAAGGAAGCATGGACTCAGGAAGAGGAGTTGGCTCTCATACGTGCGCATCAGATTTATGGGAACAAATGGGCAGAATTAGCGAAGATATTACCTGGAAGGACAGACAATGCTATAAAAAACCATTGGAACAGTTCCGTAAAAAAGAAATTGGATTCTTACTTGGCATCAGGCTTGCTTACTCAGTTACAAAATGTACCACTTGCTGGAAATCCGAATCAACCTATTGCTTCCGTCTCTTCGAGGTTGCAGCAGAGTGGAGAAGATAATGGTCCAAGGGGTACTGAAGGAGAGGAAGTTTCACAGTGTAGCCAGGAGTCGGCTAATGCCGGTTACTTTTCATCAGCCAGAGATATGAACAGTGTTGCTTTACGTACTGGAGAGGAATACAGGCCAAATGAAGAGCCTAGTCAAGCATCCTGTTCAGAGCCATATTACGTGTCTCTGGATGAAGTAACTGTATCCCTTCCAGACATGGCTGACCAAGAGATTTGCGTTGAACAGAAATATTCACACAACCCTGGAAATTCCAATAACGGGGAAGGCCAACTTGATTTAATTGACTTGACCAATATTTCCTCACTGGACTTTGGGCAGGAATCATCACAGTTCCAAAATGATTGCATGATGAATGTTCCGTTTCAGACTTCGGTGGGGTTAGGTGTCGCAACAACCATGCAACCGACATCTATAGACTCTGTTAAACCCGAACACATGTTGATGTCAGACGATGAATGTTGCAGAATCCTATTTTCAGAAGCAATAAGCGATGGATGTTTTTCTTCTGAAGATTATAATAAATGTGTAAATATGGTTGATTTATTAGAAGGCCCCTCATTTCTTTATCAGTCATCATTACCATCTGTCCCCTCAGTTGTTTCTTCTACTGGAGATAGGTTGATGTATACGGCCGAAGCCAATCAGTTGGTTGGCTCTGAGGATCAGCAGTTTGTCTCCAGAACGCAGGATAACATAATTTATGCCAGTGAATTGTCCAGTCCTCCTTGTATCCGTAGGATAGACAACACTGAAATGCAAGAGCCATCGGACGTTGTCAAAGATGATTCAAAATTGGTCCCTGTAAATAGTTTTGGCTGTGGATCAGATGCAAAGTCAACTTCATATGTGCATACAGAACAGGACACAGGTGCTCTATGTTATGAACCTCCCCGCTTCCCAAGCTTGGACATTCCTTTCTTAAGCTGTGATCTTATACAGTCAGGAGGCGATATGCAGCAAGAATTCAGTCCCCTTGGTATCCGCCAATTTATGATGTCTTCTATGAACTGTCTAACTCCTTTTAGATTATGGGACTCTCCTTCTCGGGATGATAGCCCAGATGCTTTGTTAAAAAGTGCTGCTAAAACGTTCACAAGTACACCATCTATATTAAAGAAACGAAACCGAGATCTCTTATCTCCATTGTCGGATAAAAGAATTGACAAGAAACTTGAGATTGAAATGACATCAACCTTGATAAAAAACTTTTCCCGATTGGATGTCATGTTTGATGACAATGAGGCTCAGGGAGCAGATTTGATTCCTCCATCTTCAATGCCGAAATGGGACTCTGGTACCTCTGTTGAAGATGATAAAGAGAATTGTGGACAAGCTGTTAAAGTGGAATCAGTAGGGGAGAAAAATAAGCATGCTATTTTGGACGACAAAAAATCTGAAAAAGATTCAGGTGATGGTAGTTCTCAGGAAAAAATTAAGCAGGAACCTGTTTCTGTTGATTCTGCGATCGATAATGATGGTAGCGCTGCCGAGGAGATTGTCCAACAACCGTCTGGAGTTTTGGTTGAGCATGATGTGAATGACCTATTAATGTATTCACCAGATCAAGTAAATTTGAAATCAGAAAGAGTTCTTAGTTTAAGTGCGAGAACTAAAAAAAATCCATGCTCAAGGATTAATTCACCATCTGTTTGGTTAAAGGAGCATGAAAGACTTTCAGTTGCCGTTACATGTATACATTCTGTCAGTTCATCAGGCCCGGGGGAGAATTCGGGTGATCACACTGGAAATGATGGTGGTCTGGAAACATGTAGCATATTTGGTGGAACACCATTTAGGAAAAGCATTGAGTCGCCTTCAGCATGGAAATCTCCTTGGTTCATCAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGGATTTTGGGTACTTTATGAGCCCTGGTGACAGAAGCTACGATGCAATCGGGTTGATGAAACAGATCAATGAACAGACTGCTGCTCAGTATGCCAGTGCTCATGAGATCTTAGGAAATGAAACTCCTAAGGCGTTACCTAAAGGTAAGTCCAGAAACGATGGGGATGAAGACCGGGAAGATATCGATCCTAATAATCAGCGTGGGGACTGTTCTCAGTCAGCTTCAAGTGCCTTGATGGAACGACGTGTGCTTGACTTTAGTGAATGTGGAACTCCGGTCAAAGGTGATAGCAGCAAATCCTCAGCTATGAGCTTCTCAAGCCCAACTTCGTATTTGTTGAAGGGCTGTAGATAA 2868 0.4243 CRRTTGPTRRSTKGQWTPEEDETLRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNRYGPKKWSTIAQKLPGRIGKQCRERWHNHLNPTINKEAWTQEEELALIRAHQIYGNKWAELAKILPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQNVPLAGNPNQPIASVSSRLQQSGEDNGPRGTEGEEVSQCSQESANAGYFSSARDMNSVALRTGEEYRPNEEPSQASCSEPYYVSLDEVTVSLPDMADQEICVEQKYSHNPGNSNNGEGQLDLIDLTNISSLDFGQESSQFQNDCMMNVPFQTSVGLGVATTMQPTSIDSVKPEHMLMSDDECCRILFSEAISDGCFSSEDYNKCVNMVDLLEGPSFLYQSSLPSVPSVVSSTGDRLMYTAEANQLVGSEDQQFVSRTQDNIIYASELSSPPCIRRIDNTEMQEPSDVVKDDSKLVPVNSFGCGSDAKSTSYVHTEQDTGALCYEPPRFPSLDIPFLSCDLIQSGGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDDSPDALLKSAAKTFTSTPSILKKRNRDLLSPLSDKRIDKKLEIEMTSTLIKNFSRLDVMFDDNEAQGADLIPPSSMPKWDSGTSVEDDKENCGQAVKVESVGEKNKHAILDDKKSEKDSGDGSSQEKIKQEPVSVDSAIDNDGSAAEEIVQQPSGVLVEHDVNDLLMYSPDQVNLKSERVLSLSARTKKNPCSRINSPSVWLKEHERLSVAVTCIHSVSSSGPGENSGDHTGNDGGLETCSIFGGTPFRKSIESPSAWKSPWFINTFLSSPRIDTEITIEDFGYFMSPGDRSYDAIGLMKQINEQTAAQYASAHEILGNETPKALPKGKSRNDGDEDREDIDPNNQRGDCSQSASSALMERRVLDFSECGTPVKGDSSKSSAMSFSSPTSYLLKGCR 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11447g00002 955 MobiDBLite consensus disorder prediction 625 696 - -
Vium11447g00002 955 MobiDBLite consensus disorder prediction 1 20 - -
Vium11447g00002 955 ProSiteProfiles Myb-like domain profile. 112 162 IPR001005 -
Vium11447g00002 955 FunFam Transcriptional activator Myb isoform A 65 117 - -
Vium11447g00002 955 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 59 IPR017930 -
Vium11447g00002 955 MobiDBLite consensus disorder prediction 927 955 - -
Vium11447g00002 955 MobiDBLite consensus disorder prediction 884 903 - -
Vium11447g00002 955 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 166 IPR017930 -
Vium11447g00002 955 PANTHER MYB PROTEIN-RELATED 13 86 - -
Vium11447g00002 955 FunFam Transcriptional activator Myb isoform A 12 64 - -
Vium11447g00002 955 SUPERFAMILY Homeodomain-like 14 69 IPR009057 -
Vium11447g00002 955 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Vium11447g00002 955 CDD SANT 67 111 IPR001005 -
Vium11447g00002 955 Gene3D - 118 178 - -
Vium11447g00002 955 SMART sant 64 113 IPR001005 -
Vium11447g00002 955 SMART sant 12 61 IPR001005 -
Vium11447g00002 955 SMART sant 116 164 IPR001005 -
Vium11447g00002 955 CDD SANT 16 59 IPR001005 -
Vium11447g00002 955 FunFam Transcription factor MYB3R-2 118 180 - -
Vium11447g00002 955 MobiDBLite consensus disorder prediction 875 913 - -
Vium11447g00002 955 CDD SANT 119 159 IPR001005 -
Vium11447g00002 955 Gene3D - 65 116 - -
Vium11447g00002 955 MobiDBLite consensus disorder prediction 931 949 - -
Vium11447g00002 955 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Vium11447g00002 955 Gene3D - 12 64 - -
Vium11447g00002 955 SUPERFAMILY Homeodomain-like 62 158 IPR009057 -
Vium11447g00002 955 MobiDBLite consensus disorder prediction 186 224 - -
Vium11447g00002 955 ProSiteProfiles Myb-like domain profile. 60 111 IPR001005 -
Vium11447g00002 955 MobiDBLite consensus disorder prediction 640 683 - -
Vium11447g00002 955 Pfam Myb-like DNA-binding domain 65 111 IPR001005 -
Vium11447g00002 955 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
Vium11447g00002 955 Pfam Myb-like DNA-binding domain 117 159 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11447g00002 Vium-Chr11447 9587 16150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11447g00002 3 955 MYB Transcription Factor Family AT4G32730 44.347 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium11447g00002 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11447g00002 - K09420 gmx:100811335 1645.56