Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11436g00010 ATGGCAACCGATATGCAAAGGCTTGTGGGAACGAGTGAGGATGATGAAGAAATAGGAATGGATGTGAAGGATGAGGATGATGATGAAGATGATTACGAGGAAAATGGAGGCGAGCAGAGAAATGCTTCAGGGATGGTGGGGATTGATGGTGGGAATGAGATAGGAACTGCCACTGGTGACAACAGATTTGCACAGCACCAGCAGTTTCATGAACAAGCAGGTACCCCTGGTGGAGGTACTCGAAGATCTAGGCCAGTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCGCAGGAGGGCCATCACTGCAAGGATCTTGGCTGGGCTACGCAGGCATGGCAACTACAATCTAAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCAAGGGAGGCTGGATGGGTGGTTCTTCCAGATGGTACTACTTTTCCCTCAAGATCTCAGGGTCAAAAGCCAGCTGGTGGTAATTCTACAATTCTCACTTCATCATCTTCCCATGTGGCTTCACAACAAACTCCATCCCCTTCTCTTAGGGGAGTTGCTTCTGGCTATCGGAGCCCTTTAGAGTATAGTGCATGTCAAACAAAAGGTGTTTTTATGCCAACTCCATCTCCTTATGATCTATCCTCAACTTCCCGATCTCAAACATCTATTGTAGGGGATGGAGAAGCACAAAGAGACAACCATCCTCTGATTAGTGGTTCAATTGATAATGCTGATGAGAAACAGATTGCTGACTTGCCTGCTAGATTACCCGAGCGTGATTTGGCTGGTACCCCATATGTTCCAGTTTATGTGATGCTGCCGTTAGGGGTGATCAATATAAAATGTGAGCTTGTTGATCCTGATGGGTTGCTAAAGCAGCTGAGGGTGTTGAAATCGGTGCATGTTGACGGTGTTATGGTAGATTGTTGGTGGGTAATCGTGGAGGCCCATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAAGTTAAGCTTAAGCTACAGGTTGTTATGTCATTTCATGAATGTGGAGGAAATTTTGGTGATGATGTTTGTATTCCATTGCCGCATTGGGTTGCTGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGGCACAACCCCGAATGTCTTTCTTGGGGAATAGATAAGGAACGGGTTTTAAGAGGTCGTACTGCTGTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTTGAGGATGGCTTAATCTCCATGATTGAAGTTGGACTCGGTCCATGTGGAGAGCTAAGATATCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGTTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGCAAGAGGTCACGCTATTTGGGCTAGAGGACCAGATAATGCTGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGTGTTACTGCAAAGTTAGCAGGTATTTACTGGTGGTACAAGACTGCAAGTCATGCTACTGAATTAACTGCTGGGTACTATAACCCATGCAATCGTGATGGCTATGCTGCTATTATGACAATGTTAAAGATAAATGGAGTTAGCTTAAACATTCCTTGTGTTGAGTTGCACACATTAAACCAACATGAGGGTTTTCCAGAGACATTTGCAGATCCTGAGGGATTAGTCTGGCAAGTGTTGAATGCCGGTTGGGATGTTGACCTACCAGTTACTAGTCAGAATGGATTTCCTTGCCTAAACAGAGTCAGCTATAACAAGGTTTTGGATCATGCCAAGCCCATGAATGATCCAGATGGAAGGCACTTTTCATCGTTTACTTACCTGAGGCTTAGTCCACTTCTTATGGAACGACAAAACTTCATAGAGTTTGAACGATTTGTCAAAAGGATGCATGGGGAAGCTGTTCTTGATCTTCAGGTATAA 2109 0.4381 MATDMQRLVGTSEDDEEIGMDVKDEDDDEDDYEENGGEQRNASGMVGIDGGNEIGTATGDNRFAQHQQFHEQAGTPGGGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGQKPAGGNSTILTSSSSHVASQQTPSPSLRGVASGYRSPLEYSACQTKGVFMPTPSPYDLSSTSRSQTSIVGDGEAQRDNHPLISGSIDNADEKQIADLPARLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSVHVDGVMVDCWWVIVEAHAPQEYNWNGYKRLFQMVREVKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGLISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEARGHAIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCVTAKLAGIYWWYKTASHATELTAGYYNPCNRDGYAAIMTMLKINGVSLNIPCVELHTLNQHEGFPETFADPEGLVWQVLNAGWDVDLPVTSQNGFPCLNRVSYNKVLDHAKPMNDPDGRHFSSFTYLRLSPLLMERQNFIEFERFVKRMHGEAVLDLQV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11436g00010 702 Pfam BES1/BZR1 plant transcription factor, N-terminal 79 215 IPR008540 -
Vium11436g00010 702 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 577 600 IPR001554 GO:0000272|GO:0016161
Vium11436g00010 702 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 299 313 IPR001554 GO:0000272|GO:0016161
Vium11436g00010 702 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 508 527 IPR001554 GO:0000272|GO:0016161
Vium11436g00010 702 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 435 457 IPR001554 GO:0000272|GO:0016161
Vium11436g00010 702 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 542 558 IPR001554 GO:0000272|GO:0016161
Vium11436g00010 702 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 559 570 IPR001554 GO:0000272|GO:0016161
Vium11436g00010 702 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 342 363 IPR001554 GO:0000272|GO:0016161
Vium11436g00010 702 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 320 338 IPR001554 GO:0000272|GO:0016161
Vium11436g00010 702 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 617 639 IPR001554 GO:0000272|GO:0016161
Vium11436g00010 702 MobiDBLite consensus disorder prediction 208 238 - -
Vium11436g00010 702 SUPERFAMILY (Trans)glycosidases 261 698 IPR017853 -
Vium11436g00010 702 MobiDBLite consensus disorder prediction 144 182 - -
Vium11436g00010 702 Pfam Glycosyl hydrolase family 14 268 687 IPR001554 GO:0000272|GO:0016161
Vium11436g00010 702 MobiDBLite consensus disorder prediction 58 74 - -
Vium11436g00010 702 MobiDBLite consensus disorder prediction 17 35 - -
Vium11436g00010 702 MobiDBLite consensus disorder prediction 144 184 - -
Vium11436g00010 702 MobiDBLite consensus disorder prediction 1 97 - -
Vium11436g00010 702 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 216 695 IPR001554 GO:0000272|GO:0016161
Vium11436g00010 702 Gene3D Glycosidases 256 701 - -
Vium11436g00010 702 MobiDBLite consensus disorder prediction 82 97 - -
Vium11436g00010 702 PRINTS Plant beta-amylase signature 683 697 IPR001371 GO:0000272|GO:0016161
Vium11436g00010 702 PRINTS Plant beta-amylase signature 425 434 IPR001371 GO:0000272|GO:0016161
Vium11436g00010 702 PRINTS Plant beta-amylase signature 668 682 IPR001371 GO:0000272|GO:0016161
Vium11436g00010 702 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11436g00010 Vium-Chr11436 28138 34250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11436g00010 1 699 Glycoside Hydrolase AT2G45880 65.149 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vium11436g00010 Glyco_hydro_14 1.6e-100 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11436g00010 K01177 - gmx:100805560 1304.27