Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11436g00008 ATGGCAACCGATATGCAAAGGCTTGTGGGAACGAGTGAGGATGATGAAGAAATAGGAATGGATGTGAAGGATGAGGATGATGATGAAGATGATTACGAGGAAAATGGAGGCGAGCAGAGAAATGCTTCAGGGATGGTGGGGATTGATGGTGGGAATGAGATAGGAACTGCCACTGGTGACAACAGATTTGCACAGCACCAGCAGTTTCATGAACAAGCAGGTACCCCTGGTGGAGGTACTCGAAGATCTAGGCCAGTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCGCAGGAGGGCCATCACTGCAAGGATCTTGGCTGGGCTACGCAGGCATGGCAACTACAATCTAAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCAAGGGAGGCTGGATGGGTGGTTCTTCCAGATGGTACTACTTTTCCCTCAAGATCTCAGGTAATTATCTTGCAAGATGGTCAAAAGCCAGCTGGTGGTAATTCTACAATTCTCACTTCATCATCTTCCCATGTGGCTTCACAACAAACTCCATCCCCTTCTCTTAGGGGAGTTGCTTCTGGCTATCGGAGCCCTTTAGAGTATAGTGCATGTCAAACAAAAGGGGATGGAGAAGCACAAAGAGACAACCATCCTCTGATTAGTGGTTCAATTGATAATGCTGATGAGAAACAGATTGCTGACTTGCCTGCTAGATTACCCGAGCGTGATTTGGCTGGTACCCCATATGTTCCAGTTTATGTGATGCTGCCGTTAGGGGTGATCAATATAAAATGTGAGCTTGTTGATCCTGATGGGTTGCTAAAGCAGCTGAGGGTGTTGAAATCGGTGCATGTTGACGGTGTTATGGTAGATTGTTGGTGGGTAATCGTGGAGGCCCATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAAGTTAAGCTTAAGCTACAGGTTGTTATGTCATTTCATGAATGTGGAGGAAATTTTGGTGATGATGTTTGTATTCCATTGCCGCATTGGGTTGCTGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGGCACAACCCCGAATGTCTTTCTTGGGGAATAGATAAGGAACGGGTTTTAAGAGGTCGTACTGCTGTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTTGAGGATGGCTTAATCTCCATGATTGAAGTTGGACTCGGTCCATGTGGAGAGCTAAGATATCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGTTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGCAAGAGGTCACGCTATTTGGGCTAGAGGACCAGATAATGCTGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGTGTTACTGCAAAGTTAGCAGGTATTTACTGGTGGTACAAGACTGCAAGTCATGCTACTGAATTAACTGCTGGGTACTATAACCCATGCAATCGTGATGGCTATGCTGCTATTATGACAATGTTAAAGATAAATGGAGTTAGCTTAAACATTCCTTGTGTTGAGTTGCACACATTAAACCAACATGAGGGTTTTCCAGAGACATTTGCAGATCCTGAGGGATTAGTCTGGCAAGTGTTGAATGCCGGTTGGGATGTTGACCTACCAGTTACTAGTCAGAATGGATTTCCTTGCCTAAACAGAGTCAGCTATAACAAGGTTTTGGATCATGCCAAGCCCATGAATGATCCAGATGGAAGGCACTTTTCATCGTTTACTTACCTGAGGCTTAGTCCACTTCTTATGGAACGACAAAACTTCATAGAGTTTGAACGATTTGTCAAAAGGATGCATGGGGAAGCTGTTCTTGATCTTCAGGTATAA 2058 0.4383 MATDMQRLVGTSEDDEEIGMDVKDEDDDEDDYEENGGEQRNASGMVGIDGGNEIGTATGDNRFAQHQQFHEQAGTPGGGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQVIILQDGQKPAGGNSTILTSSSSHVASQQTPSPSLRGVASGYRSPLEYSACQTKGDGEAQRDNHPLISGSIDNADEKQIADLPARLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSVHVDGVMVDCWWVIVEAHAPQEYNWNGYKRLFQMVREVKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGLISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEARGHAIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCVTAKLAGIYWWYKTASHATELTAGYYNPCNRDGYAAIMTMLKINGVSLNIPCVELHTLNQHEGFPETFADPEGLVWQVLNAGWDVDLPVTSQNGFPCLNRVSYNKVLDHAKPMNDPDGRHFSSFTYLRLSPLLMERQNFIEFERFVKRMHGEAVLDLQV 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11436g00008 685 Pfam BES1/BZR1 plant transcription factor, N-terminal 79 203 IPR008540 -
Vium11436g00008 685 SUPERFAMILY (Trans)glycosidases 244 681 IPR017853 -
Vium11436g00008 685 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 418 440 IPR001554 GO:0000272|GO:0016161
Vium11436g00008 685 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 542 553 IPR001554 GO:0000272|GO:0016161
Vium11436g00008 685 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 303 321 IPR001554 GO:0000272|GO:0016161
Vium11436g00008 685 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 560 583 IPR001554 GO:0000272|GO:0016161
Vium11436g00008 685 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 325 346 IPR001554 GO:0000272|GO:0016161
Vium11436g00008 685 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 491 510 IPR001554 GO:0000272|GO:0016161
Vium11436g00008 685 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 600 622 IPR001554 GO:0000272|GO:0016161
Vium11436g00008 685 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 282 296 IPR001554 GO:0000272|GO:0016161
Vium11436g00008 685 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 525 541 IPR001554 GO:0000272|GO:0016161
Vium11436g00008 685 MobiDBLite consensus disorder prediction 1 96 - -
Vium11436g00008 685 MobiDBLite consensus disorder prediction 58 74 - -
Vium11436g00008 685 Gene3D Glycosidases 239 684 - -
Vium11436g00008 685 PRINTS Plant beta-amylase signature 651 665 IPR001371 GO:0000272|GO:0016161
Vium11436g00008 685 PRINTS Plant beta-amylase signature 408 417 IPR001371 GO:0000272|GO:0016161
Vium11436g00008 685 PRINTS Plant beta-amylase signature 666 680 IPR001371 GO:0000272|GO:0016161
Vium11436g00008 685 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 208 678 IPR001554 GO:0000272|GO:0016161
Vium11436g00008 685 MobiDBLite consensus disorder prediction 17 35 - -
Vium11436g00008 685 Pfam Glycosyl hydrolase family 14 251 670 IPR001554 GO:0000272|GO:0016161
Vium11436g00008 685 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11436g00008 Vium-Chr11436 28136 34250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11436g00008 1 682 Glycoside Hydrolase AT2G45880 63.920 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vium11436g00008 Glyco_hydro_14 1.4e-100 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11436g00008 K01177 - gmx:100805560 1250.34