Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11436g00007 ATGGCAACCGATATGCAAAGGCTTGTGGGAACGAGTGAGGATGATGAAGAAATAGGAATGGATGTGAAGGATGAGGATGATGATGAAGATGATTACGAGGAAAATGGAGGCGAGCAGAGAAATGCTTCAGGGATGGTGGGGATTGATGGTGGGAATGAGATAGGAACTGCCACTGGTGACAACAGATTTGCACAGCACCAGCAGTTTCATGAACAAGCAGGTACCCCTGGTGGAGGTACTCGAAGATCTAGGCCAGTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCGCAGGAGGGCCATCACTGCAAGGATCTTGGCTGGGCTACGCAGGCATGGCAACTACAATCTAAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCAAGGGAGGCTGGATGGGTGGTTCTTCCAGATGGTACTACTTTTCCCTCAAGATCTCAGGTAATTATCTTGCAAGATGGTCAAAAGCCAGCTGGTGGTAATTCTACAATTCTCACTTCATCATCTTCCCATGTGGCTTCACAACAAACTCCATCCCCTTCTCTTAGGGGAGTTGCTTCTGGCTATCGGAGCCCTTTAGAGTATAGTGCATGTCAAACAAAAGGTGTTTTTATGCCAACTCCATCTCCTTATGATCTATCCTCAACTTCCCGATCTCAAACATCTATTGTAGGGGATGGAGAAGCACAAAGAGACAACCATCCTCTGATTAGTGGTTCAATTGATAATGCTGATGAGAAACAGATTGCTGACTTGCCTGCTAGATTACCCGAGCGTGATTTGGCTGGTACCCCATATGTTCCAGTTTATGTGATGCTGCCGTTAGGGGTGATCAATATAAAATGTGAGCTTGTTGATCCTGATGGGTTGCTAAAGCAGCTGAGGGTGTTGAAATCGGTGCATGTTGACGGTGTTATGGTAGATTGTTGGTGGGTAATCGTGGAGGCCCATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAAGTTAAGCTTAAGCTACAGGTTGTTATGTCATTTCATGAATGTGGAGGAAATTTTGGTGATGATGTTTGTATTCCATTGCCGCATTGGGTTGCTGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGGCACAACCCCGAATGTCTTTCTTGGGGAATAGATAAGGAACGGGTTTTAAGAGGTCGTACTGCTGTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTTGAGGATGGCTTAATCTCCATGATTGAAGTTGGACTCGGTCCATGTGGAGAGCTAAGATATCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGTTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGCAAGAGGTCACGCTATTTGGGCTAGAGGACCAGATAATGCTGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGTGTTACTGCAAAGTTAGCAGGTATTTACTGGTGGTACAAGACTGCAAGTCATGCTACTGAATTAACTGCTGGGTACTATAACCCATGCAATCGTGATGGCTATGCTGCTATTATGACAATGTTAAAGATAAATGGAGTTAGCTTAAACATTCCTTGTGTTGAGTTGCACACATTAAACCAACATGAGGGTTTTCCAGAGACATTTGCAGATCCTGAGGGATTAGTCTGGCAAGTGTTGAATGCCGGTTGGGATGTTGACCTACCAGTTACTAGTCAGAATGGATTTCCTTGCCTAAACAGAGTCAGCTATAACAAGGTTTTGGATCATGCCAAGCCCATGAATGATCCAGATGGAAGGCACTTTTCATCGTTTACTTACCTGAGGCTTAGTCCACTTCTTATGGAACGACAAAACTTCATAGAGTTTGAACGATTTGTCAAAAGGATGCATGGGGAAGCTGTTCTTGATCTTCAGGTATAA 2127 0.4368 MATDMQRLVGTSEDDEEIGMDVKDEDDDEDDYEENGGEQRNASGMVGIDGGNEIGTATGDNRFAQHQQFHEQAGTPGGGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQVIILQDGQKPAGGNSTILTSSSSHVASQQTPSPSLRGVASGYRSPLEYSACQTKGVFMPTPSPYDLSSTSRSQTSIVGDGEAQRDNHPLISGSIDNADEKQIADLPARLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSVHVDGVMVDCWWVIVEAHAPQEYNWNGYKRLFQMVREVKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGLISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEARGHAIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCVTAKLAGIYWWYKTASHATELTAGYYNPCNRDGYAAIMTMLKINGVSLNIPCVELHTLNQHEGFPETFADPEGLVWQVLNAGWDVDLPVTSQNGFPCLNRVSYNKVLDHAKPMNDPDGRHFSSFTYLRLSPLLMERQNFIEFERFVKRMHGEAVLDLQV 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11436g00007 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 548 564 IPR001554 GO:0000272|GO:0016161
Vium11436g00007 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 441 463 IPR001554 GO:0000272|GO:0016161
Vium11436g00007 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 305 319 IPR001554 GO:0000272|GO:0016161
Vium11436g00007 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 583 606 IPR001554 GO:0000272|GO:0016161
Vium11436g00007 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 348 369 IPR001554 GO:0000272|GO:0016161
Vium11436g00007 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 326 344 IPR001554 GO:0000272|GO:0016161
Vium11436g00007 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 514 533 IPR001554 GO:0000272|GO:0016161
Vium11436g00007 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 565 576 IPR001554 GO:0000272|GO:0016161
Vium11436g00007 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 623 645 IPR001554 GO:0000272|GO:0016161
Vium11436g00007 708 Pfam Glycosyl hydrolase family 14 274 693 IPR001554 GO:0000272|GO:0016161
Vium11436g00007 708 Gene3D Glycosidases 262 707 - -
Vium11436g00007 708 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 222 701 IPR001554 GO:0000272|GO:0016161
Vium11436g00007 708 MobiDBLite consensus disorder prediction 58 74 - -
Vium11436g00007 708 Pfam BES1/BZR1 plant transcription factor, N-terminal 79 221 IPR008540 -
Vium11436g00007 708 PRINTS Plant beta-amylase signature 431 440 IPR001371 GO:0000272|GO:0016161
Vium11436g00007 708 PRINTS Plant beta-amylase signature 674 688 IPR001371 GO:0000272|GO:0016161
Vium11436g00007 708 PRINTS Plant beta-amylase signature 689 703 IPR001371 GO:0000272|GO:0016161
Vium11436g00007 708 MobiDBLite consensus disorder prediction 214 231 - -
Vium11436g00007 708 MobiDBLite consensus disorder prediction 17 35 - -
Vium11436g00007 708 MobiDBLite consensus disorder prediction 1 97 - -
Vium11436g00007 708 SUPERFAMILY (Trans)glycosidases 267 704 IPR017853 -
Vium11436g00007 708 MobiDBLite consensus disorder prediction 214 244 - -
Vium11436g00007 708 MobiDBLite consensus disorder prediction 82 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11436g00007 Vium-Chr11436 28136 34250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11436g00007 1 705 Glycoside Hydrolase AT2G45880 64.598 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vium11436g00007 Glyco_hydro_14 1.6e-100 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11436g00007 K01177 - gmx:100805560 1300.42