Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium11431g00001 CATCTCTATCTGCAACAATGTTTAGGCAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCATATGGTCTTTCCATTATTCGTCATGTACATGGGACAAAAGCAATAGCCGAGTTTGGAGTTGTTTTCCTGTTATTCAATATTGGCTTGGAGCTTTCTGTTGAAAGGCTTAGTTCAATGAAGAAGTATGTTTTTGGATTGGGATCTGCTCAGGTTTTGGTGACTGCTGTAGTTGTTGGTTTGGTAGCTCATTATATTTGTGGTCAAGCTGGCCCTGCTGCTATTGTCATTGGGAATGGTCTAGCATTATCATCAACTGCTGTTGTTTTGCAAGTGTTACAGGAGAGAGGTGAAAGCACATCACGGCATGGAAGGGCTACGTTCTCGGTTTTACTTTTTCAGGATTTGGCAGTGGTTGTCTTGCTGATACTCATACCTCTAATTTCACCTAATTCTTCCAAAGGAGGGGTTGGCTTTCAAGCCATTGCTGAAGCACTTGGTTTGGCCGCTGTTAAGGCATTGATTGCCATTGCTGCCATAATTGCAGGTGGACGATTGCTCCTGCGACCCATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTCGTTATTCTTGGGACTAGCCTTCTCACAGCCAGGGCTGGACTTTCAATGGCATTGGGGGCATTTTTGGCAGGTTTACTATTGGCAGAAACAGAGTTTTCCTTACAGGTTGAATCTGATATTGCCCCGTACCGTGGCCTTCTCCTGGGTCTCTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTTTCAGTCGTTACTGGGACCTTGGGACTTTTGATATTTGGCAAGACTTTGTTGGTTTCTTTAATTGGTAGAATATTTGGTATTTCTCTCATTTCTGCTATTAGAGTTGGCCTTCTTCTTGCTCCTGGGGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGATGTCCTCCTTACTGTTTCTTGTTGTGGGGATTTCAATGGCCCTCACTCCTTGGCTAGCTGCAGGAGGGCAGTTCCTTGCTTCCCGTTTCGAGGTGCATGATGTGCGAAGATTATTACCTGTAGAAAGTGAGACAGACGATTTGCAAAATCATATCATTATTTGTGGATTTGGGCGAGTTGGGCAAATCATCGCACAACTTCTTTCTGAACAACTTATTCCTTTTGTTGCACTAGACGTGAGAAGTGATAGAGTGGCAATTGGACGTGCCCTGGATCTCCCTGTGTACTTTGGAGATGCTGGTAGTCGAGAGGTCCTACATAAGGTTGGAGCTGAAAGGGCAAGTGCCGCTGCAGTAACTCTAGATTCACCTGGAGCTAATTATAGAACAGTTTGGGCTTTGAGCAAATACTTCCCAAACGTCAAAACTTTTGTTCGCGCTCACGATGTTGATCATGGATTGAATTTGGAAAAGGCTGGAGCTACCGCAGTTGTTCCAGAGACCTTGGAACCAAGCCTTCAACTAGCTGCTGCAGTTCTTGCTCAGGCTAAACTTCCTACATCAGAGATTGCAGCAACCATAAACGAATTCAGATCCCGCCATTTGTCTGAGCTCACTGAAGTACGTGTTTCTTTTAATGAATATCTATTGACTTTGCATTATCGCATGCTAATTTGTTGGGATAAACTTAAAT 1723 0.4353 HLYLQQCLGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHYICGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKALIAIAAIIAGGRLLLRPIYKQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFSVVTGTLGLLIFGKTLLVSLIGRIFGISLISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQMSSLLFLVVGISMALTPWLAAGGQFLASRFEVHDVRRLLPVESETDDLQNHIIICGFGRVGQIIAQLLSEQLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERASAAAVTLDSPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLSELTEVRVSFNEYLLTLHYRMLICWDKLK 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium11431g00001 574 ProSiteProfiles RCK N-terminal domain profile. 394 516 IPR003148 GO:0006813
Vium11431g00001 574 FunFam K(+) efflux antiporter 2 chloroplastic 2 368 - -
Vium11431g00001 574 Gene3D - 390 554 - -
Vium11431g00001 574 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 8 552 - -
Vium11431g00001 574 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 391 532 IPR036291 -
Vium11431g00001 574 Pfam Sodium/hydrogen exchanger family 11 362 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium11431g00001 574 Gene3D - 2 367 IPR038770 -
Vium11431g00001 574 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 10 273 IPR004771 GO:0006812|GO:0008324|GO:0016020
Vium11431g00001 574 FunFam K(+) efflux antiporter 2 chloroplastic 390 554 - -
Vium11431g00001 574 Pfam TrkA-N domain 395 508 IPR003148 GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium11431g00001 Vium-Chr11431 245 7395 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium11431g00001 9 551 Inorganic Solute Cotransporters AT1G01790 90.608 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium11431g00001 K03455 - gmx:100791174 935.25