Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1141g00009 ATGACTTGTTTTCCTTTATTTTCCAGTAAGTCATCATCTTCAGCAAGAAAAGACCCAGAAATTGGTGAAGGCATTCATAATGTTAAACTCTACTCCTACAAACAATTAAGAAATGCCACTGATGACTTCAGTCAAGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACGACTTAAAGATGGAAAAGTTGCTGCAATAAAAGTTCTTGCAGCAGAATCAAGACAAGGAGTGAAGGAGTTCTTGACAGAGATTAATGTAATCTCAGAGATAGAGCATGAAAATTTGGTCAAGTTATATGGTTGCAGTGTTGACAAAAATAGCAGAATATTAGTCTACAATTACCTTGAGAATAATAGCCTGTCACAAACTCTTCTAGGTGGAAATCACAATAAAATGTACTTTGATTGGCGAACAAGATGTAAAATAAGTATTGGTATTGCTCGTGGACTGGCCTATCTTCATGAAGAAGTAAGGCCTCATATTGTTCACAGGGATATAAAAGCAAGCAACATCCTCCTTGATAAAGATCTTACACCCAAAATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTTAGCACCCGAGTAGCAGGAACAATAGGTTATTTGGCACCCGAGTATGCAATAGGGGGGAAGCTAACAAGGAAAGCAGATGTTTACAGCTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGAAGATGTAACACGAACACACGATTACCAATAGAAGAACAATTTCTTCTAGAGAGGACTTGGGAACTTTATGAGAGAAAGGAATTGGTGGGACTGGTAGATACATCACTTGACGGGGAATTCGATGCCGAGCAGGCTTGTAAGTTTATGAAGATTGGTCTTCTTTGCACTCAGGAATCGCCAAAGCTTCGGCCATCAATGTCTTCTGTGGTGAAGATGCTCACTGGAAAAATAGATGTTGATGACAGTAAGATAACAAAACCTGCCTTAATTTCTGATTTCATGGACCTCAAAGTAAGAAGGAACGAAGAAAGTAGTAGTTATGTGAAGAATTCATCTACCTACGATACATACTCTTCTTCAGACAACCATGACACTACCATGTCTTCTGTCACAACTACAACTTTTGCTGCAGTATATGATGAAAGCATGAGCATGTGA 1161 0.391 MTCFPLFSSKSSSSARKDPEIGEGIHNVKLYSYKQLRNATDDFSQANKIGEGGFGSVYKGRLKDGKVAAIKVLAAESRQGVKEFLTEINVISEIEHENLVKLYGCSVDKNSRILVYNYLENNSLSQTLLGGNHNKMYFDWRTRCKISIGIARGLAYLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADVYSFGVLLVEIVSGRCNTNTRLPIEEQFLLERTWELYERKELVGLVDTSLDGEFDAEQACKFMKIGLLCTQESPKLRPSMSSVVKMLTGKIDVDDSKITKPALISDFMDLKVRRNEESSSYVKNSSTYDTYSSSDNHDTTMSSVTTTTFAAVYDESMSM 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1141g00009 386 MobiDBLite consensus disorder prediction 1 15 - -
Vium1141g00009 386 MobiDBLite consensus disorder prediction 1 20 - -
Vium1141g00009 386 FunFam cold-responsive protein kinase 1 119 330 - -
Vium1141g00009 386 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 353 - -
Vium1141g00009 386 CDD STKc_IRAK 49 316 - -
Vium1141g00009 386 FunFam cold-responsive protein kinase 1 13 118 - -
Vium1141g00009 386 Gene3D Transferase(Phosphotransferase) domain 1 119 328 - -
Vium1141g00009 386 Pfam Protein kinase domain 44 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1141g00009 386 SUPERFAMILY Protein kinase-like (PK-like) 21 314 IPR011009 -
Vium1141g00009 386 ProSiteProfiles Protein kinase domain profile. 43 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1141g00009 386 Gene3D Phosphorylase Kinase; domain 1 13 118 - -
Vium1141g00009 386 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Vium1141g00009 386 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1141g00009 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1141g00009 Vium-Chr1141 55869 59563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1141g00009 31 371 Receptor kinase-like Gene Family AT1G53430 51.906 5.83e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1141g00009 Pkinase 8.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1141g00009 - - gmx:100782320 674.855