Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1141g00008 ATTGTGGTGGATGATCAGGGACGACTTAAAGATGGAAAAGTTGCTGCAATAAAAGTTCTTGCAGCAGAATCAAGACAAGGAGTGAAGGAGTTCTTGACAGAGATTAATGTAATCTCAGAGATAGAGCATGAAAATTTGGTCAAGTTATATGGTTGCAGTGTTGACAAAAATAGCAGAATATTAGTCTACAATTACCTTGAGAATAATAGCCTGTCACAAACTCTTCTAGGTGGAAATCACAATAAAATGTACTTTGATTGGCGAACAAGATGTAAAATAAGTATTGGTATTGCTCGTGGACTGGCCTATCTTCATGAAGAAGTAAGGCCTCATATTGTTCACAGGGATATAAAAGCAAGCAACATCCTCCTTGATAAAGATCTTACACCCAAAATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTTAGCACCCGAGTAGCAGGAACAATAGGTTATTTGGCACCCGAGTATGCAATAGGGGGGAAGCTAACAAGGAAAGCAGATGTTTACAGCTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGAAGATGTAACACGAACACACGATTACCAATAGAAGAACAATTTCTTCTAGAGAGGACTTGGGAACTTTATGAGAGAAAGGAATTGGTGGGACTGGTAGATACATCACTTGACGGGGAATTCGATGCCGAGCAGGCTTGTAAGTTTATGAAGATTGGTCTTCTTTGCACTCAGGAATCGCCAAAGCTTCGGCCATCAATGTCTTCTGTGGTGAAGATGCTCACTGGAAAAATAGATGTTGATGACAGTAAGATAACAAAACCTGCCTTAATTTCTGATTTCATGGACCTCAAAGTAAGAAGGAACGAAGAAAGTAGTAGTTATGTGAAGAATTCATCTACCTACGATACATACTCTTCTTCAGACAACCATGACACTACCATGTCTTCTGTCACAACTACAACTTTTGCTGCAGTATATGATGAAAGCATGAGCATGTGA 1002 0.3962 IVVDDQGRLKDGKVAAIKVLAAESRQGVKEFLTEINVISEIEHENLVKLYGCSVDKNSRILVYNYLENNSLSQTLLGGNHNKMYFDWRTRCKISIGIARGLAYLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADVYSFGVLLVEIVSGRCNTNTRLPIEEQFLLERTWELYERKELVGLVDTSLDGEFDAEQACKFMKIGLLCTQESPKLRPSMSSVVKMLTGKIDVDDSKITKPALISDFMDLKVRRNEESSSYVKNSSTYDTYSSSDNHDTTMSSVTTTTFAAVYDESMSM 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1141g00008 333 Gene3D Transferase(Phosphotransferase) domain 1 67 275 - -
Vium1141g00008 333 ProSiteProfiles Protein kinase domain profile. 1 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1141g00008 333 FunFam cold-responsive protein kinase 1 66 277 - -
Vium1141g00008 333 Pfam Protein tyrosine and serine/threonine kinase 14 261 IPR001245 GO:0004672|GO:0006468
Vium1141g00008 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 112 124 IPR008271 GO:0004672|GO:0006468
Vium1141g00008 333 PIRSF TyrPK_CSF1-R 11 68 - -
Vium1141g00008 333 PIRSF TyrPK_CSF1-R 56 328 - -
Vium1141g00008 333 Gene3D Phosphorylase Kinase; domain 1 6 66 - -
Vium1141g00008 333 CDD STKc_IRAK 7 263 - -
Vium1141g00008 333 SMART serkin_6 1 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1141g00008 333 SUPERFAMILY Protein kinase-like (PK-like) 9 280 IPR011009 -
Vium1141g00008 333 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 6 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1141g00008 Vium-Chr1141 52878 54881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1141g00008 6 316 Receptor kinase-like Gene Family AT1G53440 50.804 2.75e-95 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1141g00008 PK_Tyr_Ser-Thr 6.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1141g00008 - - gmx:100782320 573.933